Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03067 ATGAACAGTATTTTGATTCTCTTACTTTGTGTTCTTTTATCATCTACTTCCCATGCTTCTTCTATTACTCGGCAAAATTTCTGCAAGGCTGACCTCAACCGTCCAGACACCCCTTCTGGATATCAATGTCTTCCCTCTGATACAGTAACAGCTGCAGACTTTAAATACAGTTTTAATGGAAAACCAGGAATTACACTCCCATCTAAATCTCTAATATTCCTTGCAACTGTTCATCAGTTTCCTATGCTCAATGGACTTGGCATTTCTGCAGCACGTGCAGAGTTCGAGGAAGGTGGATTTGTTCCACTGCATGAGGAGGATGCCAATGAAATGGTAATGGTGCTTAAAGGTCAACTTGATGTTGGACTCTTGACACCTCTGAATTCTTATTGCAATACACTCATACCGGGAGATATTATGCTTTTTCCAAAAGGACAGCCGCATTATCTTATCAATTCTGGTCGTGGGAAAGCCGTCGTTGTTGCCGCTTATAGTAGCCCTAACCCTGTATTTCGTTTACTTTATGAAGAACTGTTCGCCAACGACGTCCCTAGCCGCATCATTTCCCAAGTTAGCTTCCTTGATGAACTCCAAGTCAGGAAGAACAAGGCTCGTTTCAACGGCACCGGCTAG 633 0.4297 MNSILILLLCVLLSSTSHASSITRQNFCKADLNRPDTPSGYQCLPSDTVTAADFKYSFNGKPGITLPSKSLIFLATVHQFPMLNGLGISAARAEFEEGGFVPLHEEDANEMVMVLKGQLDVGLLTPLNSYCNTLIPGDIMLFPKGQPHYLINSGRGKAVVVAAYSSPNPVFRLLYEELFANDVPSRIISQVSFLDELQVRKNKARFNGTG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03067 210 Gene3D Jelly Rolls 22 210 IPR014710 -
Vimu11g03067 210 Pfam Cupin 69 169 IPR006045 -
Vimu11g03067 210 SMART Cupin_1_3 56 200 IPR006045 -
Vimu11g03067 210 SUPERFAMILY RmlC-like cupins 25 186 IPR011051 -
Vimu11g03067 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Vimu11g03067 210 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Vimu11g03067 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Vimu11g03067 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 20 201 - -
Vimu11g03067 210 CDD cupin_OxOx 25 206 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03067 Vimu-Chr11 50213067 50213699 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03067 25 210 Miscellaneous Gene Families AT1G72610 39.683 5.47e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03067 - - vra:106773097 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03067 11 50213067 50213699 Vimu11g03067 11 50213067 50213699 ECH