Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03065 ATGAATTCATCAAAAGAGATGATGAACAGTATTCTGATTCTCTTACTTTGTGCTCTTTTTTCATCCACTTCCCATGCTTCCTCTATTACTCGGCAAAATTTCTGCAAGGCTGACCTCAACCGTCCAGACACCCCTTCTGGATATCAATGTCTTCCCTCTGATACAGTAACAGCTGCAGACTTTAAATACAGTTTTAATGGAAAACCAGGCATTCCACTCCCGTCCAACACTCTAATATTCCTTGCAACTGTTCATCAGTTTCCTATGCTCAATGGACTTGGCATTTCTGCAGCACTTGGAGAGTTCGAGGAAGGTGGATTTATTCCAGTGCATGATGATGATGCCAATAAAATAGTAATGGTGATTGAAGGTCAATTTGACGTTGGACTCTTGACACCTCTGAAATCTTATTGCAATACACTCATACCGGGAGATATTATGGTTTTTCCAAAAGGACAGCCGCATTATCTTATGAATTCTGGTCGTGGGAAAGCCGTTGCTGTTGCCGCTTATAGTAGCCCTAACCCTGTATTTCGTTTCCTTTATGAAGAACTGTTCGCCAACGACGTCCCTAGCCGCATCCTTTCCCAAGTTAGCTTCCTTGATAAACACCAAGTCAGGAAGTTCAAGGCTCGTTTCAACGGCACCGGCTAG 654 0.4312 MNSSKEMMNSILILLLCALFSSTSHASSITRQNFCKADLNRPDTPSGYQCLPSDTVTAADFKYSFNGKPGIPLPSNTLIFLATVHQFPMLNGLGISAALGEFEEGGFIPVHDDDANKIVMVIEGQFDVGLLTPLKSYCNTLIPGDIMVFPKGQPHYLMNSGRGKAVAVAAYSSPNPVFRFLYEELFANDVPSRILSQVSFLDKHQVRKFKARFNGTG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03065 217 CDD cupin_OxOx 32 213 IPR001929 GO:0030145
Vimu11g03065 217 Gene3D Jelly Rolls 29 217 IPR014710 -
Vimu11g03065 217 SMART Cupin_1_3 63 207 IPR006045 -
Vimu11g03065 217 PRINTS Germin signature 110 130 IPR001929 GO:0030145
Vimu11g03065 217 PRINTS Germin signature 139 159 IPR001929 GO:0030145
Vimu11g03065 217 PRINTS Germin signature 172 187 IPR001929 GO:0030145
Vimu11g03065 217 SUPERFAMILY RmlC-like cupins 32 214 IPR011051 -
Vimu11g03065 217 Pfam Cupin 81 194 IPR006045 -
Vimu11g03065 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 25 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03065 Vimu-Chr11 50192143 50192796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03065 32 217 Miscellaneous Gene Families AT1G72610 38.860 2.36e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03065 - - vra:106773097 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03065 11 50192143 50192796 Vimu11g03065 11 50192143 50192796 ECH