Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03062 ATGAAGAAGATAAGTGAGATTATTTTCCTCTTGAGTCTTGTGTCATGGACTTCCTATGGTGCTGTCAATGATTTCTGTGTAGCAGACCTAAAGGCTCCAGATGGCCCTTCAGGCTATCCGTGCAAACCAATCAACGAAGTGACAGCGGATGACTTTGTGTTCTCTGGCTTGGTAGAGGGAAACACCACAAACCCTTTCAATGCTGCATTAACCTCTGCATTTGTCACTGATTTTCCAGGTTTGAACAGTCTTGGTATTTCCGCAGGACGATTAGACATAGGAAAAGGTGGATCAATCCCAATGCACACACACCCTGGAGCTACTGAACTTTTGATACTTGTGGAAGGTGAAATCACTGCTGGTTTTATGACACCATTTCATCTTTATACGAAGGCACTCAAACCAGGAGATGTAATAGTTTTCCCACAAGGACAACTGCATTTTCAAGTCAATTCTGGAAACCAAAAAGCCACTGCATTTCTGGCTTTCAGTAGTGCAAACCCTGGAGCACAACTACTTGACCTTTTGTTGTTCGGTAATAGCTTACCTTCTGACATCATTGCAGAAACTACCTTCCTTGATGTAGAACAAGTCAATAAGCTTAAGGCTCGTTTTGGTGGCATAGGAATTGTTTCTTCCTAA 642 0.4252 MKKISEIIFLLSLVSWTSYGAVNDFCVADLKAPDGPSGYPCKPINEVTADDFVFSGLVEGNTTNPFNAALTSAFVTDFPGLNSLGISAGRLDIGKGGSIPMHTHPGATELLILVEGEITAGFMTPFHLYTKALKPGDVIVFPQGQLHFQVNSGNQKATAFLAFSSANPGAQLLDLLLFGNSLPSDIIAETTFLDVEQVNKLKARFGGIGIVSS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03062 213 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Vimu11g03062 213 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Vimu11g03062 213 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Vimu11g03062 213 Pfam Cupin 58 198 IPR006045 -
Vimu11g03062 213 Gene3D Jelly Rolls 20 208 IPR014710 -
Vimu11g03062 213 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Vimu11g03062 213 FunFam Auxin-binding protein ABP19a 19 208 - -
Vimu11g03062 213 SUPERFAMILY RmlC-like cupins 20 204 IPR011051 -
Vimu11g03062 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 21 203 - -
Vimu11g03062 213 CDD cupin_OxOx 22 205 IPR001929 GO:0030145
Vimu11g03062 213 SMART Cupin_1_3 55 199 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03062 Vimu-Chr11 50172949 50173590 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03062 21 209 Miscellaneous Gene Families AT1G72610 57.292 1.82e-72 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03062 - - gmx:100783206 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03062 11 50172949 50173590 Vimu11g03062 11 50172949 50173590 ECH