Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03060 ATGAAGATGATTTACACTCTTTTTCTTTTCGCTCTTCTCTCATCAGCTTGTTGCCATGCTTTTGTCAATGATTTCTGCGTAGCAAACCTAAAGGGTCCTGATGGCCCTTCAGGCTACGAGTGCAAGCCACCGAACACAGTTACAGTGGATGACTTTGTGTTCTCTGGTTTTGTAGCAGGAAACACCTCAGGAATTTTCAATGCTGCAGTAACACCTGCATTTGTGACTGAACTTCCAGGTGTGAACGGTCTAGGTTTATCTGCAGCACGGTTAGACATAGCCAAAGGTGGATTTGTTCCAGTGCATTCACATGCTGCTTCGAGTGAAATACTGATAATGGTGAAGGGTGAAATCACTGCAGGGTTCATAACACCTTCTGCAGCTTATCAGAAGACACTGAAACCAGGTGATGTTATGGTTTTCCCACAAGGACTCTTGCATTTCCAAGTGAATTCTGGTAAAGGAAAAGCCACTGCTTTTCTTGCTTTCAGTAATCCAAGCCCAGGAGCACAACTGCTTGATCTTCTTTTATTCGGCAACAACTTGCCTTCTGAGTTGATTTCACAAACTACTTTGCTTGATTATGCACAAGTGAAGAAGCTTAAGGCTCGTTTTGGTGGCAGAGGATAG 630 0.4365 MKMIYTLFLFALLSSACCHAFVNDFCVANLKGPDGPSGYECKPPNTVTVDDFVFSGFVAGNTSGIFNAAVTPAFVTELPGVNGLGLSAARLDIAKGGFVPVHSHAASSEILIMVKGEITAGFITPSAAYQKTLKPGDVMVFPQGLLHFQVNSGKGKATAFLAFSNPSPGAQLLDLLLFGNNLPSELISQTTLLDYAQVKKLKARFGGRG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03060 209 FunFam Auxin-binding protein ABP19a 19 208 - -
Vimu11g03060 209 SUPERFAMILY RmlC-like cupins 22 204 IPR011051 -
Vimu11g03060 209 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vimu11g03060 209 Gene3D Jelly Rolls 20 208 IPR014710 -
Vimu11g03060 209 SMART Cupin_1_3 55 199 IPR006045 -
Vimu11g03060 209 Pfam Cupin 64 198 IPR006045 -
Vimu11g03060 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 18 203 - -
Vimu11g03060 209 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Vimu11g03060 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Vimu11g03060 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Vimu11g03060 209 CDD cupin_OxOx 19 205 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03060 Vimu-Chr11 50164221 50164850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03060 1 207 Miscellaneous Gene Families AT5G20630 56.938 2.80e-77 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03060 - - gmx:100813853 342.428