Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03052 TTGTTTTGTTTGTGTTGTTCGAAAGCAAGGTTCTTGACGCAGATCGATTCTCCAGCCTTCCGCCTTCCTTCAATTCAACTCAGCTCTCTGCACCTTCCCCTGCGCGCCCATGGCCGCATCATAGCACCGATTGATCAATCGATCACATCAAAATCAATGGCGGAAAGCGCATCACCGTCGTCCAAACCCTCGCCAATGGACCCTCAGAACCCCGCACCATCCTCCAACCCTACAATCCCTTCCCCTTCCCACAACAACATGCCTTCACCTTCGCTCCCTCCGCTTCCCCAAGACCAGCAACAGCAGCAGCAGCAGCAGCAAAATCTTCATCAACAGTTGAGTCCGCCTCAACAACAACAGCCTCTCGTGTCGTCGCAAGCCATGAACACCATCAACGGCATCAACCCTATCTCCAATTTCCAACTCCAGCAGACCCTGCAGCGATCGCCTTCCATGTCGCGCCTCAATCAAATCCAGCCTCAGCAGCAGGCGCAGCAGCAGTTCGGCGTCATGCGCCAGCAGGCCGGATTGTACGGCGGACAAATGAGCTTTGCTGCCGCGGGCGGCGGAGCGGGGCAACAGCAGCAGTTGGGCGGCTCCAATTTGTCGCGGTCCGCGCTGATAGGGCAGAGCGGACACTTCCCCATGTTGTCTGGTGCTGGCTCGCAGTTTAACTTGCTCTCCTCGCCAAGGCAAAAAGGTGGGCTAGTTCAGCAGTCTCAGTTCTCAGGTAATTCTGCTGGACAGTCTCTGCAAGGAATGCAAGCAATGGGTATGATTGGAACGCCAAATCTCAACTCTCAACTGCGGGCTAATGGAGCCCTTGCTTATGCACAGCAGATGCGAATGGGTCACGGTCAAATCAGGCAGATGTCTCAGCAAAGTTCACTTAACACTGGACAGGTTCAAGGTTTACCAAGGTCATCATCCCTTGCTTTTATGAACTCTCAGTTGTCTGGGTTGTCTCAGAATGGGCAACCAGGGATGGTCCATAACTCCTTAACACAGCAACAGTGGCTTAAGCAAATGCCAGCAATGTCTGGCCCTGCCTCACCATTGCGTCTTCAACAGCAGCAGAGGCAGCAGCTGGCTTCTTCTACTCAATTGCAACAAAACTCTATGAGCCTGAACCAGCAACAATTGTCCCAGCTGATTCAGCAACAGAAATCGATGGGGCAGTCTCAGCTGCATCAGCAGCAACAGCAGCAGCAGCCTCAACAACAGCTGCAACAACAGCTCTTACATCAGCAGTCACAACAACAGTCTCAGCCACAGGCTTCTGTCCATCAACAGCAACAGTCTCCAAGGATGCCAGGAACTGCAGGCCAAAAGTCATTCAGTCTAACAGGATCACAGCCAGACGCTACTGCATCTGGTGCAACTACACCAGGTGGTAGTTCTAGCCAAGGAACAGAAGCAACAAACCAAGTTCTTGGGAAGAGAAAGATACAGGATTTAGTTGCACAGGTGGATCCACAAGGTACACTGGACCCCGAAGTTATAGATCTTCTTTTAGAGCTTGCTGATGACTTCATTGACTCTACAACTACAAACGGTTGCATTTTGGCAAAACATAGAAAATCATCAACTTTGGAGTCCAAGGATTTATTGCTACACCTAGAGAAAAATTGGGATTTAACAATTCCTGGATATTCAAGTGAAGAGAAGAAGTATCAAAGCAAACCTCAATTAAATGACCTTCACAAGAGGCGCCTAGATATGATTCGCACAATGTTGGAATCGTCGGCCTCTGAGTCAAATATTAATAGTTCTAAAGAGTTGAGTAGACAGGGCATTTCAAATCCTACCCCTATGGGAGCTCACCATCTAGTAAGACCCATGAGTTCAGAGCAGGTGGTTTCTCAGGCAGCTGGTTCTCAAATGCTACAGCAGATGACAAGGTTCCTTTTGTGGTCTGTTTATTTTGCTTACCACCCGGACAAGTCAATGTGGTCTGGAAGTGATTGCTTGCTGAGACTGATTAGTATACAAGGGAACTGCAAAACTGGTGTAAAGCTTTTCAATTTTGGATCGAGTGTAAAGCAAACCATCAAATAG 2058 0.4927 MFCLCCSKARFLTQIDSPAFRLPSIQLSSLHLPLRAHGRIIAPIDQSITSKSMAESASPSSKPSPMDPQNPAPSSNPTIPSPSHNNMPSPSLPPLPQDQQQQQQQQQNLHQQLSPPQQQQPLVSSQAMNTINGINPISNFQLQQTLQRSPSMSRLNQIQPQQQAQQQFGVMRQQAGLYGGQMSFAAAGGGAGQQQQLGGSNLSRSALIGQSGHFPMLSGAGSQFNLLSSPRQKGGLVQQSQFSGNSAGQSLQGMQAMGMIGTPNLNSQLRANGALAYAQQMRMGHGQIRQMSQQSSLNTGQVQGLPRSSSLAFMNSQLSGLSQNGQPGMVHNSLTQQQWLKQMPAMSGPASPLRLQQQQRQQLASSTQLQQNSMSLNQQQLSQLIQQQKSMGQSQLHQQQQQQQPQQQLQQQLLHQQSQQQSQPQASVHQQQQSPRMPGTAGQKSFSLTGSQPDATASGATTPGGSSSQGTEATNQVLGKRKIQDLVAQVDPQGTLDPEVIDLLLELADDFIDSTTTNGCILAKHRKSSTLESKDLLLHLEKNWDLTIPGYSSEEKKYQSKPQLNDLHKRRLDMIRTMLESSASESNINSSKELSRQGISNPTPMGAHHLVRPMSSEQVVSQAAGSQMLQQMTRFLLWSVYFAYHPDKSMWSGSDCLLRLISIQGNCKTGVKLFNFGSSVKQTIK 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03052 685 CDD TAF12 478 546 IPR003228 GO:0005669|GO:0006352
Vimu11g03052 685 FunFam Transcription initiation factor TFIID subunit 12 473 548 - -
Vimu11g03052 685 MobiDBLite consensus disorder prediction 96 124 - -
Vimu11g03052 685 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 63 588 IPR037794 GO:0000124|GO:0005669|GO:0046695
Vimu11g03052 685 MobiDBLite consensus disorder prediction 45 63 - -
Vimu11g03052 685 MobiDBLite consensus disorder prediction 395 477 - -
Vimu11g03052 685 MobiDBLite consensus disorder prediction 344 375 - -
Vimu11g03052 685 MobiDBLite consensus disorder prediction 45 124 - -
Vimu11g03052 685 SUPERFAMILY Histone-fold 476 547 IPR009072 GO:0046982
Vimu11g03052 685 Pfam Transcription initiation factor TFIID subunit A 479 546 IPR003228 GO:0005669|GO:0006352
Vimu11g03052 685 MobiDBLite consensus disorder prediction 64 95 - -
Vimu11g03052 685 MobiDBLite consensus disorder prediction 351 375 - -
Vimu11g03052 685 Gene3D Histone, subunit A 473 548 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03052 Vimu-Chr11 50074467 50081812 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03052 K03126 - gmx:100783017 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03052 11 50074467 50081812 Vimu11g03052 11 50074467 50081812 ECH