Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03047 ATGAGGTGCACAAGAAATACTCGGGCTGCAGAAAGAAATGACCAATGGTCCAATAAGAGTTTTGAAGAAAAAGATTGGCCCAATCAGAAGCGGAAAATAAAAATGGGTATTATTGAAAAGATCAAAGAAATTGAAGCCGAAATGGCTCGAACCCAGAAAAACAAAGCCACAGAGTATCATCTTGGGCAGCTCAAGGCGAAGATAGCAAAACTAAGGACACAATTATTGGAGCCTCCGAAAGGTTCTAGTGGAGGCGGAGAAGGATTTGAAGTTACAAAATTTGGCCATGGACGTGTTGCGCTGATTGGATTTCCAAGTGTGGGGAAGTCTACTCTTTTGACAATGTTAACGGGCACACACTCTGAAGCTGCATCTTATGAGTTCACAACTCTGACCTGTATTCCTGGGATTATACACTATAATGATACTAAGATTCAGTTACTCGATCTTCCTGGAATTATTGAAGGTGCTTCTGAAGGCAAGGGACGAGGGAGACAGGTTATTGCTGTTGCTAAATCTTCAGACATAGTGTTGATGGTTCTTGATGCTTCCAAAGCCTCCTACTATGCAAAGGGTACAGCAACATACCACAATGCTCGTGTGTCTGCTCACTATGAATTAATGTTGCATGCAAAATTGCTTCGTGAGGGTCATAGGCAAATATTGACCAGAGAGCTGGAAGCGGTAGGCTTGCGATTAAACAAGAGACCACCTCAGATATATTTTAAAAAGAAAAAGACGGGAGGCATTTCATTCAACAGCACTTTGCCTTTGACTCATGTCGATGAGAAGCTGTGTTATCAGATCCTGCATGAGTACAAGATTCACAATGCAGAGGCTAGTCTTGATAAATGGCTTTTATCACCGATGGAATCTCACTATGTTGATAATTTTATTCTTTTCCGTGAGGATGCTACAGTGGATGATCTCATAGATGTCATTGAAGGAAACCGAAAATACATGAAGTGTGTATATGTGTACAACAAGATAGACGTCATTGGTATTGATGATGTGGACAGATTAGCTCGACAACCCAATTCTGTTGTCATCAGCTGCAATTTGAAGCTGAACTTAGACAGACTACTTGCAAGGATGTGGGACGAAATGGGTCTGGTTAGAGTTTACACAAAACCACAAGGCCAGCAACCAGATTTCTCTGATCCTGTGGTTCTTTCTGCTGATAGAGGAGGCTGCACTGTAGAAGACTTTTGCAACCATATTCACAGAAGTTTGGTGAAGGATGTCAAATATGTTCTGGTCTGGGGCTCTAGTGCAAGACACTACCCTCAACATTGCGGTCTTAGTCATAATCTTCGTGACGAAGATGTGGTTCAAATTGTTAAGAAAAAGGAAAAGGAGGAGGGAGGAAGGGGAAGATTTAAGTCACATTCCAATGCACCTGCTCGGATATCTGACAGAGAGAAGAAGGCACCACTGAAGACATAA 1446 0.4205 MRCTRNTRAAERNDQWSNKSFEEKDWPNQKRKIKMGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGEGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDIVLMVLDASKASYYAKGTATYHNARVSAHYELMLHAKLLREGHRQILTRELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEASLDKWLLSPMESHYVDNFILFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDRLARQPNSVVISCNLKLNLDRLLARMWDEMGLVRVYTKPQGQQPDFSDPVVLSADRGGCTVEDFCNHIHRSLVKDVKYVLVWGSSARHYPQHCGLSHNLRDEDVVQIVKKKEKEEGGRGRFKSHSNAPARISDREKKAPLKT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03047 481 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 207 475 IPR045001 GO:0003924|GO:0005525
Vimu11g03047 481 CDD DRG 98 377 IPR045001 GO:0003924|GO:0005525
Vimu11g03047 481 FunFam Developmentally-regulated GTP-binding protein 1 363 450 - -
Vimu11g03047 481 PRINTS GTP1/OBG GTP-binding protein family signature 164 182 IPR006073 GO:0005525
Vimu11g03047 481 PRINTS GTP1/OBG GTP-binding protein family signature 99 119 IPR006073 GO:0005525
Vimu11g03047 481 PRINTS GTP1/OBG GTP-binding protein family signature 120 138 IPR006073 GO:0005525
Vimu11g03047 481 PRINTS GTP1/OBG GTP-binding protein family signature 147 162 IPR006073 GO:0005525
Vimu11g03047 481 ProSiteProfiles TGS domain profile. 370 448 IPR004095 -
Vimu11g03047 481 NCBIfam small GTP-binding protein domain 98 186 IPR005225 GO:0005525
Vimu11g03047 481 Gene3D - 363 455 IPR012675 -
Vimu11g03047 481 SUPERFAMILY TGS-like 366 448 IPR012676 -
Vimu11g03047 481 CDD TGS_DRG1 369 449 - -
Vimu11g03047 481 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 97 370 IPR031167 GO:0005525
Vimu11g03047 481 Pfam TGS domain 372 448 IPR004095 -
Vimu11g03047 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 385 IPR027417 -
Vimu11g03047 481 ProSitePatterns GTP1/OBG family signature. 149 162 IPR006074 GO:0005525
Vimu11g03047 481 Pfam 50S ribosome-binding GTPase 98 188 IPR006073 GO:0005525
Vimu11g03047 481 MobiDBLite consensus disorder prediction 450 481 - -
Vimu11g03047 481 MobiDBLite consensus disorder prediction 1 25 - -
Vimu11g03047 481 Pfam C-terminal region of MMR_HSR1 domain 297 371 IPR031662 -
Vimu11g03047 481 Coils Coil 34 54 - -
Vimu11g03047 481 Gene3D - 166 299 - -
Vimu11g03047 481 Gene3D - 28 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03047 Vimu-Chr11 50035325 50041957 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03047 K06944 - gmx:100305672 730.709