Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03046 ATGGAAACTGTGGTTGGAATTGAGGATAATGATGATGGGAAGTTTGAAGACAGTGGACTTGACAGAAGCAGTTCTGCTCTGTCTTCACCGAAGCAAATTTCTAACCCAATTGTATACAAGCTTGTTCGGGTTGAAGGTGATGGAAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGGGGATTTTCTTGAGTATGAAAACAGTGAAATGCATGTTGTTGCTGACACTGGACAGAGTTTAGAATGCATATCGATTGAAAGATCATCTTCTGGGAAGCTTCGATTGGAGTGCTCGGAAGGCTCCACAGAGGCTGATTTGGGGAAACTAAATGCAAAATTACAGTACATTGAGCAGATTTTGCAAAAGGTCAAAGAAGAGGAGAAACAACGCATATCATGTGGATCACCTGTTCATTCTCATGTAAACGTAGACAGCCAGTGTTCAGCTGATAAATGTCTTGTCACGGATGGGAAGGTTCAATCTGAAACTCCCTACCAGGAAATTCCTTCTATAGCGTCAAGTTTAAATTATACTCATAGCAATCAATCTGGGAGTATGGATCAGTGTTCTAGACCTTCAGAAGGAGTAATAGAAAGTGGGTCATATGCTTCTGCTGTCCATTCCAATTTGAACCCTGACCTTTCCATGTCAGATGGAGAAATATGCTTGGACAAGCTATCAATCAGAGAACTTCATGAACTGTTTAAGGTAACTTTTGGTCGAGAAACTACTGTGAAAGATAAACAGTGGCTGAAAAGGAGGATTGCCATGAGTTTAACCAACTCATGTGATGTTTCAGCAACAACTTTCGTTATTAAAGATAACAAAATAGTTAGAAAATTTGTTGAAGAAAGTTCTGGAAATATGAATGTTGCGTCCTTAATTTCTTCAGAAAATATGACTGAAGAAGAGGATATCAACTTTAAGGATTCGTCTGCTGTAAATGCTTGTGGAATTGATGATAAGCAAGTTGTTTCTGAAATAAGATTGAGAAATCAAAATACAGAATATGGATTGGAAGATATGACTAATCAGACAGAACAGAGAGCTGCAAAAAGAATTCGGAGACCTACAAAGAGATATATTGAAGAGCTCTCTGAAAATGAATCTAAAGAGCAAAGTCCTAGGTTGCCAGTATCTAATAAAAGCATGGAACTTGGACATGTTTCTTCAACATCACATGCCAGGCCTGCTAGAAATACTTTTTCAGAGGTGAGAACCTGTGGCACGAGGTACGCCTCTCTTGGAGGATCTGATGTCGAAATTCCTTGTGTGTCTTGGATTCGGAGAAGTCGTCCAAGGAAAGATATGGCATCTCTTATGAAATTCCATCCAAGTGCCATGAGTGAGACTGAAAATTTGAGTAATAAGCTCATTGAGCACAGTTCTGATGCTGTTGGTGAGATTCCAGACAAAGTTTTCAAGTCTAGTAGAATGCCTGCTACGTTTCATCAACCATCTTCTTCTGAACCTGAGAAAGAGAAGCAGTGTCCAGTAATAGGAGCAATTGAGCCACGGCAGGAATTGAGGCCAAAAAGGGCAGATCCACCTGGCCATACTTCACATGACAACATAGTTACTGTTCCCACTGCAAAAGGAGGGATGAGGAGGAAGCATCACCGGGCATGGACACTCGTTGAGGTGATAAAGTTGGTTGAAGGTGTGTCAAGGTGTGGAGCAGGGAGGTGGTCTGAAATCAAACGCCTCTCCTTTGCATCATACTCGTATCGAACATCTGTTGATCTTAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCAATGACACCTGCACCTGCTGATGAGGGGATAAATTCGCGGAAGCATGGTACGGCTCCAATTCCTGAGAAAATTTTACTACGTGTAAGAGAGCTTGCTGAGATGAATTCTCAGGTTCCTCCAAACATCAGCTCAAACAAGGTAGCAGCTGGTGCAGGGAGTGTGCATGAAGATAGATCAGGCTACTTGTAA 1980 0.4162 METVVGIEDNDDGKFEDSGLDRSSSALSSPKQISNPIVYKLVRVEGDGRLVPATDDEVMEVGDFLEYENSEMHVVADTGQSLECISIERSSSGKLRLECSEGSTEADLGKLNAKLQYIEQILQKVKEEEKQRISCGSPVHSHVNVDSQCSADKCLVTDGKVQSETPYQEIPSIASSLNYTHSNQSGSMDQCSRPSEGVIESGSYASAVHSNLNPDLSMSDGEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSCDVSATTFVIKDNKIVRKFVEESSGNMNVASLISSENMTEEEDINFKDSSAVNACGIDDKQVVSEIRLRNQNTEYGLEDMTNQTEQRAAKRIRRPTKRYIEELSENESKEQSPRLPVSNKSMELGHVSSTSHARPARNTFSEVRTCGTRYASLGGSDVEIPCVSWIRRSRPRKDMASLMKFHPSAMSETENLSNKLIEHSSDAVGEIPDKVFKSSRMPATFHQPSSSEPEKEKQCPVIGAIEPRQELRPKRADPPGHTSHDNIVTVPTAKGGMRRKHHRAWTLVEVIKLVEGVSRCGAGRWSEIKRLSFASYSYRTSVDLKDKWRNLLKASFAMTPAPADEGINSRKHGTAPIPEKILLRVRELAEMNSQVPPNISSNKVAAGAGSVHEDRSGYL 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03046 659 Pfam Myb-like DNA-binding domain 544 592 IPR001005 -
Vimu11g03046 659 ProSiteProfiles Myb-like domain profile. 545 592 IPR001005 -
Vimu11g03046 659 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 537 596 IPR017930 -
Vimu11g03046 659 MobiDBLite consensus disorder prediction 634 659 - -
Vimu11g03046 659 SUPERFAMILY Homeodomain-like 543 602 IPR009057 -
Vimu11g03046 659 SMART sant 541 594 IPR001005 -
Vimu11g03046 659 Gene3D - 532 642 - -
Vimu11g03046 659 Coils Coil 108 128 - -
Vimu11g03046 659 MobiDBLite consensus disorder prediction 1 30 - -
Vimu11g03046 659 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 643 - -
Vimu11g03046 659 CDD SANT_TRF 543 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03046 Vimu-Chr11 50028219 50034159 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03046 - - gmx:100775511 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03046 11 50028219 50034159 Vimu11g03046 11 50028219 50034159 ECH