Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03032 ATGACCTTGGGATGGGATCAGTTTGAAACAAACAAAATGTTATTTGGTGTAAAAAGCACATTCAATGAGGAGTTATATACAACAAAGCTTGAAAGAGGACCCCAGACAAGAGAGTTGGAAAAGCAAGCTTTGAGAATTGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTCCATCTAGCAGAGGAAAGAGGCCTTTACCATAACTTTGATATTGATGAAGAAACCAGATTTTCTTCCGTCTATAGGGGTAACATTGCTGATGATGTTGGATACGATGAAAACGAGGACAAGTTGGATTCACACAATTCTGAAAGGTTTGATAATATTTATGGTTTAGTCAGCAAGAGACCAGGCGAAGTAAGTGGTCAGAAAGGCAATAATGGAGCTCAAACATGGCCTCATTTGTCCTCTGTGGTATCTCCTCAACCGGTTATATGTGTTATATTTTAG 453 0.3929 MTLGWDQFETNKMLFGVKSTFNEELYTTKLERGPQTRELEKQALRIAREIEGEETQDLHLAEERGLYHNFDIDEETRFSSVYRGNIADDVGYDENEDKLDSHNSERFDNIYGLVSKRPGEVSGQKGNNGAQTWPHLSSVVSPQPVICVIF 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03032 150 SMART LsmAD_2 15 84 IPR009604 -
Vimu11g03032 150 Coils Coil 36 56 - -
Vimu11g03032 150 Pfam LsmAD domain 15 83 IPR009604 -
Vimu11g03032 150 PANTHER ATAXIN 2-RELATED 4 132 IPR045117 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03032 Vimu-Chr11 49931192 49932992 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03032 - - pvu:PHAVU_010G133000g 267.314