Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03020 ATGGTTCCGCCTCTTGATAATAAAGACTTGCAAGAGATACTTAAAGTGAGGTATCCGGATTTGGAGCTTTACGTTAACCAACTCATAGAAACCTTTGAAAGGGTAAACAATATTTCCATGCTTCAATTTGTGGGTTTCCACCCAGGAAATTCTTCTTCTGGTTACTGTCCCTGCAGGGATCTCCTTAAATGGTGCAAAAGGATTGCGGATTTAGGATTTAGCCGTGATGGTAGTTTATCTGAAAACCAATGTTTTTGGGTGTATAAGGAGGCTGTTGACATATTTGCATCCTCTTCGTCTTCAATTAAAAACCGTTTGTCAGTAATGAAAGAAATTGCTGAGTTGTGGAAATTACCTGTTTCTGCTGCTGAGACCTTGTATCCCTTAGCCAAACCTATAATTAAGGATTCTATAACATGTTTAAGAATAGGCCGAGTTTCCCTGGAGTACACTGAAAAACCTTTACAACAACATAAGAGACCTTTTGTTGAGATTCGTAGTTCTTTGCATGTTTTGGAGCAAATAGCATGTTCTGTCAAGTATAATGAGCCTGTACTCTTGGTTGGAGAAACTGGTACTGGGAAGACGACCATTGTCCAAAATTTGGCTTTAAGGCTTGGCCAAAAGCTTACCGTTTTTAATCTTAGTCAGCAAAGTGATGTTGCTGACTTACTAGGTGGTTTTAAGCCTATGGATGCTCAGTCTGTCTATTTGTCTCTTTATAAAGAGTTCAAAGAACTGTTTACAAAGACATTTCCTGTAAAGAATAATGGAGGCTTTATTACTTATCTACATGAGTATATAGAAATTCATCGAAAGAAGTTTTTGATTGATAAGAATGGGGAACATCTGTTGAAAGGGTTGGAAGGATTGCAAATAGCAGTTAGAAAGTCACTTAAGCTTATACAACCTGGATCTTCCAAAAAGCGTAAAAGACCAATCCAATCTTGGGAGAGATTTGACATAAAACTGCATAATGTCTGTCAAAGTAATCCTTCTTCAACGATGATGTTTTCTTTTGTCGAAGGAAGTTTTGTTACTGCACTTAGAAAGGGTGAGTGGATTTTGCTTGATGAGGTGAATTTGGCTCCTCCAGAAACCTTGCAAAGAATTGTTGGTGTTCTAGAAGGGGAACATGGTGTGCTATGTTTAGCTGAAAGAGGTGATACAGATTATATACATCGCCATCCAAACTTCCGTATATTTGCCTGCATGAATCCAGCAACAGATGCAGGGAAGCGGGATTTGCCCTTCTCTTTAAGGAGTAGATTTACTGAGTATTTTGTCGATGATGTTTTGAATGATGAGGATTTAAGTCTATTTATTAGTCAATTCATTAGTAGTGGCTACATGGATCAACAGTTGGTTAATAAAATTGTTTCTTTCTATAAAGAAGCAAAATTGGAATCTGAAGAGAGGTTGCAAGATGGTGCCAACCAGAAACCTCAGTACAGTTTAAGGTCACTTTATCGTGCTCTGGAGTATATGCAGAAGGCAGAAAGAAAATTTGGATTGCAAAAGGCATTATATGATGGATTTAATATGTTTTTTGTCTCGTTGTTGGATGGATCTAGTGCTGAAATTATGAGGAAAAAAATATCATCTCTTCTGTTAGGAGGTCATATGCCTCCACATGTACATCTTTCCCGATATTTAGAGAAGTCCAAATCTGATGGATCTTCAGGGAACTATGTTCAAACTAAATCTGTACAGGAGCATCTTGGCAATTTGGCGCGTGCTGTTCTAATGAGATATCCCATCCTCTTACAAGGTCCCACATCCAGTGGGAAAACTAGCCTTGTTCGGTATCTTGCTGCAATAACTGGTCATGATTTTGTAAGAATCAACAATCATGAACATACTGATTTGCAGGAGTATCTTGGTTCTTATATAACTGACACTACTGGAAAGCTTGTTTTTAATGAAGGTGTTTTGGTTAAAGCTGTAAGAAATGGTCACTGGATTGTACTTGACGAGCTTAATTTGGCTCCATCTGATGTGTTGGAGGCATTGAACCGATTGCTTGATGATAACAGAGAGCTTTTTGTTCCTGAGCTGCAAGAAAGAATTCAAGCTCATCCAAACTTTATGCTTTTTGCTACTCAAAATCCGCCTACACTATATGGTGGCCGCAAAATGTTGTCCCGGGCATTTCGTAATCGTTTTGTTGAGATTCATGTTGGTGAAATTCCAGACAATGAGCTCAGCAAAATACTGGAGGATAGATGTAAAATCTATGTAGGTCATGCTGAAAAAATGGTTGAAGTGATGAAGGATCTTCGATTGCACAGACAGAGTAGCCGGGTCTTTGCTGGCAAACATGGATTTATAACACCTCGAGATTTGTTTCGATGGGCTGATCGTACCCAGAGATTTGGTAACTCTAATGAAGATTTGGCCAAAGATGGCTATTATCTTTTGGCAGAAAGGCTACGGGACGAGGATGAGAAGTCTGTCGTTCAAGAAATTCTGGAAAAGTACTTTCGGGTTAAACTGAATATAAAAAGTTTGTATGAACAGATATCATGTAGAGATAACTCTTCCAATTTGTTAGTTGGCTTTGGAGGTTCAGATGGTCTAGAAAGGTATGAGCTTGTTGTTAGGTTGTACTTCCTCGTGGAACGCTGCTATAACTTACGTGAGCCTGTACTGCTTGTTGGAGAAACAGGTGGAGGAAAGACTACCGGATTCCGTCCTACACGAGAGAGATCTGCATTAATTTCTGGGTATAAAGAGATAATTGAAAAGTTGAAACTAAAGACTTGTACATACTCTCATATGGACCTTTCTTCTGACATCAATGCTGCTTCTTCAACTCTTGATCGGCTGAGTGTTATGATAAGGAAATGTAAAGAAGGTCAAGTTTGTTTGGATAGAGAAGAACTTAAGGATCTTGAGCAAATTAAGTGTGATCTCAATGGCTTGCATCAAAAGTGGCAGAGTATATTTGTGTGGCAGGATGGTCCTCTCGTAGAAGCAATGAGAGATGGTGACCTTTTTCTTGTGGATGAAATATCATTGGCTGATGATAGTGTACTTGAGAGATTGAATAGTGTGTTGGAACCAGAAAGGATGCTATCTTTGGCTGAAAAAGGAGGGACCGATCTTGAGAAGGTTACTGCACATTCAAATTTTTTTGTTCTTGCAACAATGAATCCCGGCGGTGATTATGGGAAGAAGGAGTTATCTCCAGCACTACGCAATCGATTTACAGAGATATGGGTTCCCCCTGTTAATGATCTAGACGAGCTTCAAGGCATTGCTCTGAAAAGAATTTCTAAGTTTAAAGTTACTGGCAGCTTATGTCCTGAATGTCAAGAAAGACTCTCACTAATTGTTGATGCTATGATAAGGTTTTTTGAGTGGTTCAATAACTTGCATCCAGGAAGAATGCTTACAGTGAGAGATCTCATTTCTTGGGTTGACTTTTTCATTACAATGGAAACAAGCTTAGGACCAGAGCATGCACTTCTTCATGGAATATTTCTGGTTTTGCTTGATGGCTTAAGTCTAGGACCAAACAAGGGAAATGTGCAAGTTGAGAATATTGGCTTTTTGCCACTTGGGGCTTAG 3573 0.3901 MVPPLDNKDLQEILKVRYPDLELYVNQLIETFERVNNISMLQFVGFHPGNSSSGYCPCRDLLKWCKRIADLGFSRDGSLSENQCFWVYKEAVDIFASSSSSIKNRLSVMKEIAELWKLPVSAAETLYPLAKPIIKDSITCLRIGRVSLEYTEKPLQQHKRPFVEIRSSLHVLEQIACSVKYNEPVLLVGETGTGKTTIVQNLALRLGQKLTVFNLSQQSDVADLLGGFKPMDAQSVYLSLYKEFKELFTKTFPVKNNGGFITYLHEYIEIHRKKFLIDKNGEHLLKGLEGLQIAVRKSLKLIQPGSSKKRKRPIQSWERFDIKLHNVCQSNPSSTMMFSFVEGSFVTALRKGEWILLDEVNLAPPETLQRIVGVLEGEHGVLCLAERGDTDYIHRHPNFRIFACMNPATDAGKRDLPFSLRSRFTEYFVDDVLNDEDLSLFISQFISSGYMDQQLVNKIVSFYKEAKLESEERLQDGANQKPQYSLRSLYRALEYMQKAERKFGLQKALYDGFNMFFVSLLDGSSAEIMRKKISSLLLGGHMPPHVHLSRYLEKSKSDGSSGNYVQTKSVQEHLGNLARAVLMRYPILLQGPTSSGKTSLVRYLAAITGHDFVRINNHEHTDLQEYLGSYITDTTGKLVFNEGVLVKAVRNGHWIVLDELNLAPSDVLEALNRLLDDNRELFVPELQERIQAHPNFMLFATQNPPTLYGGRKMLSRAFRNRFVEIHVGEIPDNELSKILEDRCKIYVGHAEKMVEVMKDLRLHRQSSRVFAGKHGFITPRDLFRWADRTQRFGNSNEDLAKDGYYLLAERLRDEDEKSVVQEILEKYFRVKLNIKSLYEQISCRDNSSNLLVGFGGSDGLERYELVVRLYFLVERCYNLREPVLLVGETGGGKTTGFRPTRERSALISGYKEIIEKLKLKTCTYSHMDLSSDINAASSTLDRLSVMIRKCKEGQVCLDREELKDLEQIKCDLNGLHQKWQSIFVWQDGPLVEAMRDGDLFLVDEISLADDSVLERLNSVLEPERMLSLAEKGGTDLEKVTAHSNFFVLATMNPGGDYGKKELSPALRNRFTEIWVPPVNDLDELQGIALKRISKFKVTGSLCPECQERLSLIVDAMIRFFEWFNNLHPGRMLTVRDLISWVDFFITMETSLGPEHALLHGIFLVLLDGLSLGPNKGNVQVENIGFLPLGA 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03020 1190 FunFam Midasin 570 762 - -
Vimu11g03020 1190 Gene3D - 864 1074 IPR027417 -
Vimu11g03020 1190 Pfam AAA domain (dynein-related subfamily) 980 1070 IPR011704 GO:0005524|GO:0016887
Vimu11g03020 1190 Pfam AAA domain (dynein-related subfamily) 184 258 IPR011704 GO:0005524|GO:0016887
Vimu11g03020 1190 Pfam AAA domain (dynein-related subfamily) 338 424 IPR011704 GO:0005524|GO:0016887
Vimu11g03020 1190 Pfam AAA domain (dynein-related subfamily) 587 722 IPR011704 GO:0005524|GO:0016887
Vimu11g03020 1190 FunFam Midasin 862 1074 - -
Vimu11g03020 1190 Pfam Midasin AAA lid domain 9 118 IPR040848 -
Vimu11g03020 1190 Pfam Midasin AAA lid domain 734 830 IPR040848 -
Vimu11g03020 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 824 IPR027417 -
Vimu11g03020 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 499 IPR027417 -
Vimu11g03020 1190 ProSitePatterns Sigma-54 interaction domain ATP-binding region A signature. 185 198 IPR025662 -
Vimu11g03020 1190 SMART AAA_5 181 433 IPR003593 GO:0016887
Vimu11g03020 1190 SMART AAA_5 879 1080 IPR003593 GO:0016887
Vimu11g03020 1190 SMART AAA_5 583 796 IPR003593 GO:0016887
Vimu11g03020 1190 Gene3D - 570 740 IPR027417 -
Vimu11g03020 1190 Gene3D - 168 440 IPR027417 -
Vimu11g03020 1190 Pfam Midasin AAA lid domain 437 538 IPR041190 -
Vimu11g03020 1190 PANTHER MIDASIN-RELATED 1 1176 - -
Vimu11g03020 1190 CDD AAA 586 723 - -
Vimu11g03020 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 868 1147 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03020 Vimu-Chr11 49823282 49829188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03020 K14572 - gmx:102663906 1905.57