Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03012 ATGGTGTTTGGAATCTTAGGAGGAAGGAGTCAAGAGATAAAGGGGACAGTGGTGTTGATGAGCAAGAATGTGTTGGACTTCAATGAGATAGTTTCAACTGCTGATGGTGGAGTTGGTGGTATTGTTGGTGGGATCTTTGGAACTGCAACGAAAGTAGTTGGAGGAATAGCTGATACTGCCACCTCCATCTTCAGCCGCAACATTGCCATACAGTTGATCAGTGCCACCAATACTGATGGGCTTGGAAATGGAAAGGTTGGAAAGCTAACTTATTTGAATAATCATCTTCCTATGTTACCAACCTTGGGAGATAGACAAGATGCATTCAGTGTTAACTTTGAATGGGATGAGAGTTTTGGAATTCCAGGAGCATTTTACATCAAAAATTATTTGCAATCTGGTGAGTTTTTTCTAGTGAGTCTCACTCTTGAAGATATTCCAAATCATGGAACCATTCACTTTGATTGCAACTCATGGGTTTACAACGCAAAAGAGTACAAAAAGGACCGTCTTTTCTTTGTCAACAAGACTTATGTTCCAAGTGAAACTCCAACTCCACTAGTTAAGTACAGAAAAGAAGAATTGGAAAACCTAAGAGGGGATGGAACCGGGCAGCGTAAGGAATCTGATAGGATATATGATTATGATGTGTATAATGATTTGGGCAACCCAGACACGAGTGCAGATCTTGCTCGTCCTGTTCTTGGAGGTTCCAGTGCCTATCCATACCCTCGCAGAGGAAGAACTGGCAGAAACCCAACAAAAAGAGACCCTAAGAGTGAGTCTCCGACCAGCGACACTTACATTCCAAGAGATGAAAGTTTTGGTCATTTGAAGTCATCAGACTTTCTTACGTATGGGATAAAGTCCTTGGCTCAGAATGTCTTACCTCAATTTCAATCTGCATTTGGTTTGAATGCGGAGTTTGATAAGTTTGATGATGTTCGTGGACTCTTTGAAGGTGGACTTTCTCTTCCTACAGATGTGATCAGCAAAATTAGCCCCATACCAGTGATCAAGGAAATTTTCCGCACTGATGGTGAACAAGTCCTCAAGTTTCCACCACCCCATGTCATCAAAGTTAGTAAGTCTGCATGGATGACTGATGATGAATTTGGAAGAGAGATGCTTGCTGGTGTTAATCCTTGCCTAATTCAACGCCTTCAAGAGTTCCCTCCAAAGAGCAAGCTAGATGCTTCTGTGTATGGTGATCAAACTAGCACAATCACCAAAGAACATTTGGAGAACAACCTTGGTGGACTCACCGTGGATGAGGCTTTGAATGGTGACCGATTGTTCATATTAGATCACCATGATGCATTTTTGCCATATCTGAGGAAGATCAATGACCTACCCACTGCAAAGTCTTATGCCACAAGGACAATTCTTTTCTTGAAAGATGATGGCACATTGAAGCCTTTGGCTATTGAATTAAGTCTACCACATCCTAGGGGAGATGAGTTTGGTGCTGTTAGCAGAGTTATCCTACCAGCAGACGAAGGCGCTGAAAGCACAATTTGGCTACTGGCTAAGGCTTATGTTGTTGTAAATGACTCTTGCTATCATCAACTCATGAGCCACTGGTTAAATACTCATGCCACAATTGAGCCATTTGTCATAGCAACAAATAGGCATCTCAGTGCGCTCCACCCTATTCATAAACTCTTGTTGCCTCACTATCGTGACACCATGAATATCAATGCACTTGCACGACAATCACTCATCAATGCAGGTGGTATTATTGAGCAATCATTTTTGCCCGGGCCATTCGCTGTGGAGATGTCTTCAGCAGTTTACAAAAGTTGGGTTTTCACTGATCAGGCTCTTCCTGCTGATCTTCTTAAGAGAGGAATGGCAATTGAGGATCCATCTTCTCCCCATGGCCTTCGTCTTGTGATAGATGACTACCCTTATGCTGTTGATGGACTAGAGATATGGAGTGCTATTCAGTCATGGGTTAAAGACTATGTCTCAATTTACTATGCCACAGATGATGCAATTAAGAAAGACACAGAACTCCAAACTTGGTGGAAGGAAGCTGTTGAGAAGGGTCACGGTGATTTGAAAGATAAGCCTTGGTGGCCTAAGTTGAACACTGTTCAAGATCTGATTAACATTTCCAGCATTATCATATGGATTGCTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAGTACCCTTATGGAGGGTACATCCTAAACCGTCCAACTTTAACCAGAAGATTGCTCCCAGAGCCAGGAACCAAAGAATATGATGAGCTGAGCAGCAATCATCAAAAGGCTTATCTGAGAACAATTACAGGAAAATATGAGGCCCTTGTGGACCTTTCAGTGATAGAGATATTATCAAGACATGCTTCTGATGAGGTGTACCTTGGACAGAGGGACAATCCAAATTGGACTGATGACACAAAGGCTCTTCAAGCCTTCCAAAAGTTTGGAAACAAGCTGAAGGAAATTGAGAGTAAAATCTCAGAAAGGAACAACAATTCAAGTCTTAGAAACCGTGTTGGACCGGTTCAGGTGCCTTACACTGTGCTTCTTCCAACCAGTGCGGAAGGTCTCACTTTCAGAGGAATTCCCAACAGCATCTCTATTTAA 2601 0.4245 MVFGILGGRSQEIKGTVVLMSKNVLDFNEIVSTADGGVGGIVGGIFGTATKVVGGIADTATSIFSRNIAIQLISATNTDGLGNGKVGKLTYLNNHLPMLPTLGDRQDAFSVNFEWDESFGIPGAFYIKNYLQSGEFFLVSLTLEDIPNHGTIHFDCNSWVYNAKEYKKDRLFFVNKTYVPSETPTPLVKYRKEELENLRGDGTGQRKESDRIYDYDVYNDLGNPDTSADLARPVLGGSSAYPYPRRGRTGRNPTKRDPKSESPTSDTYIPRDESFGHLKSSDFLTYGIKSLAQNVLPQFQSAFGLNAEFDKFDDVRGLFEGGLSLPTDVISKISPIPVIKEIFRTDGEQVLKFPPPHVIKVSKSAWMTDDEFGREMLAGVNPCLIQRLQEFPPKSKLDASVYGDQTSTITKEHLENNLGGLTVDEALNGDRLFILDHHDAFLPYLRKINDLPTAKSYATRTILFLKDDGTLKPLAIELSLPHPRGDEFGAVSRVILPADEGAESTIWLLAKAYVVVNDSCYHQLMSHWLNTHATIEPFVIATNRHLSALHPIHKLLLPHYRDTMNINALARQSLINAGGIIEQSFLPGPFAVEMSSAVYKSWVFTDQALPADLLKRGMAIEDPSSPHGLRLVIDDYPYAVDGLEIWSAIQSWVKDYVSIYYATDDAIKKDTELQTWWKEAVEKGHGDLKDKPWWPKLNTVQDLINISSIIIWIASALHAAVNFGQYPYGGYILNRPTLTRRLLPEPGTKEYDELSSNHQKAYLRTITGKYEALVDLSVIEILSRHASDEVYLGQRDNPNWTDDTKALQAFQKFGNKLKEIESKISERNNNSSLRNRVGPVQVPYTVLLPTSAEGLTFRGIPNSISI 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03012 866 Gene3D PLAT/LH2 domain 3 178 - -
Vimu11g03012 866 Gene3D - 179 278 - -
Vimu11g03012 866 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 178 IPR036392 GO:0005515
Vimu11g03012 866 Pfam PLAT/LH2 domain 83 173 IPR001024 GO:0005515
Vimu11g03012 866 Gene3D - 279 364 IPR027433 -
Vimu11g03012 866 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 177 866 IPR013819 GO:0016702|GO:0046872
Vimu11g03012 866 FunFam Lipoxygenase 365 499 - -
Vimu11g03012 866 SUPERFAMILY Lipoxigenase 180 866 IPR036226 -
Vimu11g03012 866 ProSitePatterns Lipoxygenases iron-binding region signature 1. 522 536 IPR020833 GO:0016702|GO:0046872
Vimu11g03012 866 PRINTS Lipoxygenase signature 542 562 IPR013819 GO:0016702|GO:0046872
Vimu11g03012 866 PRINTS Lipoxygenase signature 504 521 IPR013819 GO:0016702|GO:0046872
Vimu11g03012 866 PRINTS Lipoxygenase signature 522 539 IPR013819 GO:0016702|GO:0046872
Vimu11g03012 866 PRINTS Plant lipoxygenase signature 170 191 IPR001246 GO:0016491
Vimu11g03012 866 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Vimu11g03012 866 PRINTS Plant lipoxygenase signature 457 481 IPR001246 GO:0016491
Vimu11g03012 866 PRINTS Plant lipoxygenase signature 242 261 IPR001246 GO:0016491
Vimu11g03012 866 PRINTS Plant lipoxygenase signature 209 225 IPR001246 GO:0016491
Vimu11g03012 866 PRINTS Plant lipoxygenase signature 779 793 IPR001246 GO:0016491
Vimu11g03012 866 PRINTS Plant lipoxygenase signature 144 162 IPR001246 GO:0016491
Vimu11g03012 866 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Vimu11g03012 866 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Vimu11g03012 866 Gene3D - 365 499 - -
Vimu11g03012 866 Pfam Lipoxygenase 187 849 IPR013819 GO:0016702|GO:0046872
Vimu11g03012 866 FunFam Lipoxygenase 179 278 - -
Vimu11g03012 866 ProSiteProfiles PLAT domain profile. 46 174 IPR001024 GO:0005515
Vimu11g03012 866 Gene3D - 500 865 - -
Vimu11g03012 866 PANTHER LIPOXYGENASE 11 866 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g03012 866 FunFam Lipoxygenase 501 865 - -
Vimu11g03012 866 MobiDBLite consensus disorder prediction 224 272 - -
Vimu11g03012 866 SMART LH2_4 11 175 IPR001024 GO:0005515
Vimu11g03012 866 CDD PLAT_LH2 12 175 IPR042057 -
Vimu11g03012 866 ProSitePatterns Lipoxygenases iron-binding region signature 2. 549 559 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03012 Vimu-Chr11 49755326 49760555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03012 10 866 Acyl Lipid Metabolism Gene Families AT1G55020 56.322 0.0 1005
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03012 K15718 - gmx:100127399 1524.61