Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03009 ATGTATTCTGGGGTGAAGGCGTTGTTCAACCGAAGCAAGAAGCTGAAGGGTAGGGTGGTGTTGAAGCCGAAGAATGTGTTGGACACAAATAGCATTACCAGTGTGAAAGGGGTTGTTCAAACTACCATGAGTGTAGTTGGTTCAACATTCATTGATAGTCTCAGTGCATTCTCTGGTAAATGTGTGTCTCTTCGCTTGATCAGTGCTACCAAAGCTGCTGAAAATGGAAGTGGGAAAGTTGGAAAGAAGACTTATTTGGAAGGTGTAATTTCCACTATACCAACTTTGACAGCGGAGGAATGTGCATTTGATGTTCATTTTGATTGGGACATTGAGGAAATGGGAATTCCTGGAGCATTTACAATAAGAAATCATCTGCTAGTTGAGTTCTTTCTCGTCAGTTTGACTCTTGAAGATGTTTCTAATCGTAAAGGACCATTGCGCTTCGTTTGCAACTCATGGGTTTACAATCACCATCTTTACGACAAGGATCGAATATTCTTTTCCAATGAGACGTATGTTCCAAGTGAAACACCAGTAGCACTGGTGAGCTACAGAGAAGCAGAACTGCAGATTCTGAAAGGAAATGGAAAAGGGAAACTGAGACAATGGCATAGAGTTTACGATTACGATGTTTACAATGATTTGGGCAATCCTGACAGCAATGAAGACTTAGCTCGTCCAGTTCTTGGAGCGTCTGTCACTTATCCCTACCCTCGAAGAGGAAGAACCGGAAGAAAACCCACAAAAAAAGATTGTAAGAGTGAGAAACGAAGCAGTAAAATTTATGTTCCAAGAGATGAACATTTTGGTCACTTGAAGTCATCTGACTTCCTTTCTTTTGGGATAAAATCTATATCAAAAAACGTGTGGCCTTACCTCAAACCTCGACTTGATTCAGATATCTCAAAGGATGAGTTTGAGAGCTTTGATGAAGTACATCACCTCTCTGAAGGTGGCATTAAGCTGCCTCTTGATACTCTCAGCAAAATTAGCCCTTTACCTCTGCTGCAGGAGATCTTCCGCACTGACGGTGAAAATGTCCTCAAGTTTTCAGCACCTCATGTAATTAGAGTTAGTAAATCTGCATGGATGACTGATGATGAATTTGCCAGAGAAATGCTTGCTGGTGTAAATCCTTGTTCGATTCGCCGTCTACAAGAGTTTCCACCACAAAGCAAGTTGGATCGCTCAGTCTATGGTGATCAAACAAGTAAAATCAGTGAACAACATTTGAAGATCAACCTCGAAGGGCTCACACTAGATAAGGCAATTAAGCGTGATAGATTATTCATACTAGATCACCATGACGTATTCATGCCGTTTTTGAGAAGGATAAATGAATATACATCATCAAAGGCTTATGCAACGAGGACAATCCTTTTCTTGAAAGACGATGGTACCTTAAAGCCATTGGCCATTGAGTTAAGTTTGCCACATCCAAATCAACAACTGGGTGCCTGTAGTAAAGTGGTCTTGCCTGCAAACGATGGAGTTGAAAGTACAATTTGGCTATTAGCCAAGGCTCACGTTATTGTGAACGATTCCTGTTATCATCAGCTCATAAGCCACTGGTTGAATACTCATGCCGTGATTGAACCCTTTGTCATAGCAACAAACAGAAATCTGAGTGTTCTTCACCCTGTTCATAAACTTCTATTTCCTCACTATCGTGACACAATGAATATCAATGCACTTGCTCGAGAATCACTTATTAATGCTGATGGCACCATAGAGAACTGCTTTTTGGGTGGAAAGTATGCTATGGAGATGTCTTCGGCAGTTTACAAACATTGGAAATTCCCTGAACAAGCATTGCCAGCTGATCTTATGAAGAGGTAA 1842 0.4104 MYSGVKALFNRSKKLKGRVVLKPKNVLDTNSITSVKGVVQTTMSVVGSTFIDSLSAFSGKCVSLRLISATKAAENGSGKVGKKTYLEGVISTIPTLTAEECAFDVHFDWDIEEMGIPGAFTIRNHLLVEFFLVSLTLEDVSNRKGPLRFVCNSWVYNHHLYDKDRIFFSNETYVPSETPVALVSYREAELQILKGNGKGKLRQWHRVYDYDVYNDLGNPDSNEDLARPVLGASVTYPYPRRGRTGRKPTKKDCKSEKRSSKIYVPRDEHFGHLKSSDFLSFGIKSISKNVWPYLKPRLDSDISKDEFESFDEVHHLSEGGIKLPLDTLSKISPLPLLQEIFRTDGENVLKFSAPHVIRVSKSAWMTDDEFAREMLAGVNPCSIRRLQEFPPQSKLDRSVYGDQTSKISEQHLKINLEGLTLDKAIKRDRLFILDHHDVFMPFLRRINEYTSSKAYATRTILFLKDDGTLKPLAIELSLPHPNQQLGACSKVVLPANDGVESTIWLLAKAHVIVNDSCYHQLISHWLNTHAVIEPFVIATNRNLSVLHPVHKLLFPHYRDTMNINALARESLINADGTIENCFLGGKYAMEMSSAVYKHWKFPEQALPADLMKR 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03009 613 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 172 613 IPR013819 GO:0016702|GO:0046872
Vimu11g03009 613 PRINTS Plant lipoxygenase signature 237 256 IPR001246 GO:0016491
Vimu11g03009 613 PRINTS Plant lipoxygenase signature 304 325 IPR001246 GO:0016491
Vimu11g03009 613 PRINTS Plant lipoxygenase signature 455 479 IPR001246 GO:0016491
Vimu11g03009 613 PRINTS Plant lipoxygenase signature 139 157 IPR001246 GO:0016491
Vimu11g03009 613 PRINTS Plant lipoxygenase signature 349 365 IPR001246 GO:0016491
Vimu11g03009 613 PRINTS Plant lipoxygenase signature 204 220 IPR001246 GO:0016491
Vimu11g03009 613 PRINTS Plant lipoxygenase signature 388 407 IPR001246 GO:0016491
Vimu11g03009 613 PRINTS Plant lipoxygenase signature 165 186 IPR001246 GO:0016491
Vimu11g03009 613 Pfam Lipoxygenase 182 613 IPR013819 GO:0016702|GO:0046872
Vimu11g03009 613 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 173 IPR036392 GO:0005515
Vimu11g03009 613 FunFam Lipoxygenase 363 496 - -
Vimu11g03009 613 Gene3D - 174 273 - -
Vimu11g03009 613 Pfam PLAT/LH2 domain 76 168 IPR001024 GO:0005515
Vimu11g03009 613 Gene3D PLAT/LH2 domain 4 173 - -
Vimu11g03009 613 ProSitePatterns Lipoxygenases iron-binding region signature 1. 519 533 IPR020833 GO:0016702|GO:0046872
Vimu11g03009 613 PANTHER LIPOXYGENASE 35 613 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g03009 613 PRINTS Lipoxygenase signature 539 559 IPR013819 GO:0016702|GO:0046872
Vimu11g03009 613 PRINTS Lipoxygenase signature 519 536 IPR013819 GO:0016702|GO:0046872
Vimu11g03009 613 PRINTS Lipoxygenase signature 501 518 IPR013819 GO:0016702|GO:0046872
Vimu11g03009 613 ProSiteProfiles PLAT domain profile. 39 169 IPR001024 GO:0005515
Vimu11g03009 613 FunFam Lipoxygenase 174 273 - -
Vimu11g03009 613 Gene3D - 497 613 - -
Vimu11g03009 613 ProSitePatterns Lipoxygenases iron-binding region signature 2. 546 556 IPR020834 GO:0016702|GO:0046872
Vimu11g03009 613 Gene3D - 274 362 IPR027433 -
Vimu11g03009 613 Gene3D - 363 496 - -
Vimu11g03009 613 SUPERFAMILY Lipoxigenase 175 613 IPR036226 -
Vimu11g03009 613 SMART LH2_4 13 170 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03009 Vimu-Chr11 49721844 49724474 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03009 12 613 Acyl Lipid Metabolism Gene Families AT1G55020 55.935 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03009 K15718 - gmx:547694 904.82