Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03005 ATGAGTTCAATAGTGGAAAAGAAAAAGTTGGTGAAGGGGAGAGTGGTGTTGATAAGGAAGAGTGTGATTCAAACCATAAGCAGTGTTCAGGGTCTTGTTGCCACTGGCATCAACATAATTAACGACTCAGATGAACTTGATATCACTAAGTCTGTGTCTTTCAAGTTGATTAGTCGTACCAAGTCAGAGAATGCTTGTAGTTTGGCTGGGAAAGTTGGAAAGGTTGCCTATTTGGAGAATAATGTTTCTGTGTTACGAACTTTGAAAGAGACACGGGAAGAATTTGATATATATTTTGAATGGGATGATAAAGATATGGGAACTCCAGGTGCATTTTATGTAACAAACAAAATGAATGAAGAGTTCTTCCTAGTTAGTGTCACTATTGAATATCCAAGTGAACACGACAAGAACAATATTCATTTTGACTGTAATTCCTGGGTTCACAACGATAAGCTTTCCGAAACAGGTCGCATATTCTTCGCCAACATTCCATATCTTCCTGATAAGACACCGGTGCAATTACAAGCGTACAGAGAAGAAAAGTTGAAGAATTTAAGGGGAGATGGAAAAGGAAAGCGTGAGAAATGGGATAGGATTTATGATTATGATGTATATAATGATCTGGGATTTCTTGACAGCGATGGACCACAAGATCACCCAGTTCTTGGAGGCCTCAAATATCCCTACCCTCGTAGGGTTAGGACTGGGAGAAACGTTATCCACAATAACAAAAATGGTGGTAACTACGAGGAGCAAGCAGAGATTTATTATGTGCCAAGAGATGAAAATTTCAGTGACGAGAAGACTGCAGAATTCTTTCAATTATCAAAGAAAGCTTTAGGTGGAAGCGTCGAACCTTTGCTCCTATCTTTGTATTTAAAGACCACATCAAATGAATTTAATGGCTTCGAAGAAGTGCTGAAAATGTATGAAGGTGGAGTTAATCTGCCTCTATCTATCACCGGAAACGGTAATCCAAGTGTCCTTGACTTCCCAACTCCTGATGTAATCAAAGGTAACTATTGCTTACTTGGAACTCCTAGCAAGTTTGCATGGATGACTGATGAAGAATTTGCAAGGGAGATGATTGCCGGTGTAAACCCTCTTGTAATTCGGCTTGCTAAAAAGGATGACCTTGTATCATGGGAGCAACAACTTTGCAACTGTATTCAACGCAGTACAGTAGTAACAAAAGAAAAGTTGGAGAAACACATGCATGAGATGAAAGTAGATGAGGCACCTGAAAGTGATATTGTTTGTGATTCAAAGGTATATGAAACTAACAAAGTGATCACTGAACTTAAATTTGTGGAACAGGCATTTGCTAATAACAAATTGTTCATATTGGATTACTCTAAGGCATTCATGCCGTATTTGACGAAGATAAATGAACTTCCTTCTGCAAAGGCTTATGCCACCAGGACATTCTTGTTCTTACAAGATGACGGCACATTGAAACCACTTGGTATTGAATTAAGCAAGCCACATAAATGTCCATGTTGTGGAAAACAGAATGTCGAGACCAGATTGGAGCTGCCTGCAGACAAAGGTGTCGAAGGTACAATTTGGTTACTGGCCAAAGCTCATGTTGTTGTAAATGACACCAGCTATCATCAGCTCATAAGCCACTGGTTACATACTCACGCAGTGATTGAGCCATTTTCCATAGCAACACACAGGAATCTCAGTGTACTTCACCCCATTTACAAACTCCTTCATCCTCACTTCCGTGACACCATAAATATAAATTCACTTGCCAGGAAGTCCCTAATTAGTGCAGGTAGCGTTATAGAGCAAACTTTTTTGCCTGGACCATATTCTATGGAGATGTCTTCAGCTATATACAAGAATTGGGTTTTCGCTGACCAAGCATTACCAAAGGATCTCATCAATAGAGGTTTGGCGTTTGAGGATGACGCTAATGACCTTAAGCTAGTGATAGAGGACTATCCTTACGCTGTTGATGGATTAGAAATATGGAATGCTACAAAGCTCTGGGTACAAGACTATGTCGCTCTGTATTATTCAGACGATAGGGAAATTCAAGGAGATACTGAATTGCAAGAATGGTGGAAGGAAGCTGTGGAGAAGGGTCATGCTGACTTAAAAGCAGATCAATGGCCTAAAATGCATACTTGTAATGATCTGGTGGAGATTTGCACTACCATTATATGGATTGCTTCAGCTCTTCACGCCGCTGTTAATTTTGGACAGTATCCTTATGGAGGTTATATCATAAACCGTCCTACACAAAGCCGAAGATGGATCCCAGAAGCAGGAACTGAAGAGTATGATGAGATGGCCAAGAATCCTCAAGAAGCTTTTCTGAAAACAATTACTCCAAAGTACCAAACCGTTGTTGATCTTTCAGTAATGGAGCTACTATCTACCCATGCTTCAGACGAGGTGTATCTTGGACAAAGGAACAGTCTGGATTGGACTGCTCATCAAGAAGCAAAAGTTTTGTTTAAAAGATTTACAGATGACTTAAGAAAAATTGAGAAAGAAATCTCAGACAGGAACAACAATGAAGGACTTAAAAATCGTACTGGACCAGTGAAAATGCCCTACACTGTGCTTCTTCCTACCAGTAAACCAGGGATGACTTTTAGAGGAATCCCTAACAGTATCTCTATCTAA 2643 0.3984 MSSIVEKKKLVKGRVVLIRKSVIQTISSVQGLVATGINIINDSDELDITKSVSFKLISRTKSENACSLAGKVGKVAYLENNVSVLRTLKETREEFDIYFEWDDKDMGTPGAFYVTNKMNEEFFLVSVTIEYPSEHDKNNIHFDCNSWVHNDKLSETGRIFFANIPYLPDKTPVQLQAYREEKLKNLRGDGKGKREKWDRIYDYDVYNDLGFLDSDGPQDHPVLGGLKYPYPRRVRTGRNVIHNNKNGGNYEEQAEIYYVPRDENFSDEKTAEFFQLSKKALGGSVEPLLLSLYLKTTSNEFNGFEEVLKMYEGGVNLPLSITGNGNPSVLDFPTPDVIKGNYCLLGTPSKFAWMTDEEFAREMIAGVNPLVIRLAKKDDLVSWEQQLCNCIQRSTVVTKEKLEKHMHEMKVDEAPESDIVCDSKVYETNKVITELKFVEQAFANNKLFILDYSKAFMPYLTKINELPSAKAYATRTFLFLQDDGTLKPLGIELSKPHKCPCCGKQNVETRLELPADKGVEGTIWLLAKAHVVVNDTSYHQLISHWLHTHAVIEPFSIATHRNLSVLHPIYKLLHPHFRDTININSLARKSLISAGSVIEQTFLPGPYSMEMSSAIYKNWVFADQALPKDLINRGLAFEDDANDLKLVIEDYPYAVDGLEIWNATKLWVQDYVALYYSDDREIQGDTELQEWWKEAVEKGHADLKADQWPKMHTCNDLVEICTTIIWIASALHAAVNFGQYPYGGYIINRPTQSRRWIPEAGTEEYDEMAKNPQEAFLKTITPKYQTVVDLSVMELLSTHASDEVYLGQRNSLDWTAHQEAKVLFKRFTDDLRKIEKEISDRNNNEGLKNRTGPVKMPYTVLLPTSKPGMTFRGIPNSISI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03005 880 Gene3D - 517 879 - -
Vimu11g03005 880 ProSitePatterns Lipoxygenases iron-binding region signature 2. 566 576 IPR020834 GO:0016702|GO:0046872
Vimu11g03005 880 Gene3D PLAT/LH2 domain 1 166 - -
Vimu11g03005 880 ProSiteProfiles PLAT domain profile. 27 162 IPR001024 GO:0005515
Vimu11g03005 880 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 165 880 IPR013819 GO:0016702|GO:0046872
Vimu11g03005 880 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Vimu11g03005 880 PRINTS Lipoxygenase signature 559 579 IPR013819 GO:0016702|GO:0046872
Vimu11g03005 880 PRINTS Lipoxygenase signature 539 556 IPR013819 GO:0016702|GO:0046872
Vimu11g03005 880 SMART LH2_4 27 163 IPR001024 GO:0005515
Vimu11g03005 880 Gene3D - 351 509 - -
Vimu11g03005 880 PRINTS Plant lipoxygenase signature 197 213 IPR001246 GO:0016491
Vimu11g03005 880 PRINTS Plant lipoxygenase signature 793 807 IPR001246 GO:0016491
Vimu11g03005 880 PRINTS Plant lipoxygenase signature 132 150 IPR001246 GO:0016491
Vimu11g03005 880 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Vimu11g03005 880 PRINTS Plant lipoxygenase signature 158 179 IPR001246 GO:0016491
Vimu11g03005 880 PRINTS Plant lipoxygenase signature 472 496 IPR001246 GO:0016491
Vimu11g03005 880 Pfam PLAT/LH2 domain 60 161 IPR001024 GO:0005515
Vimu11g03005 880 FunFam Lipoxygenase 518 879 - -
Vimu11g03005 880 Pfam Lipoxygenase 175 416 IPR013819 GO:0016702|GO:0046872
Vimu11g03005 880 Pfam Lipoxygenase 436 863 IPR013819 GO:0016702|GO:0046872
Vimu11g03005 880 PANTHER LIPOXYGENASE 48 880 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g03005 880 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 166 IPR036392 GO:0005515
Vimu11g03005 880 SUPERFAMILY Lipoxigenase 167 880 IPR036226 -
Vimu11g03005 880 Gene3D - 269 342 IPR027433 -
Vimu11g03005 880 ProSitePatterns Lipoxygenases iron-binding region signature 1. 539 553 IPR020833 GO:0016702|GO:0046872
Vimu11g03005 880 Gene3D - 167 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03005 Vimu-Chr11 49692838 49696699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03005 11 880 Acyl Lipid Metabolism Gene Families AT3G22400 45.856 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03005 K15718 - gmx:100802685 1116.68