Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03004 ATGAAACTTGTATTTATTCTTGAGATTTTTCCAACTGGGTTGGTTTATTCGTTAATTCTTCACATAGTTTCGTGTATAAATACCCGAGATTACATTGCTTCGTCAGACCTCACAACTCTCAGATATCAAGCACAGAAATTATATATCCTTGCTATAGCAATGAGTCTAAGAATAGTGGAAAAGAAGAAGTTGGTGAAGGGGAGGGTGGTATTGATCCGGAAAAATGTTGTTCAAACCATGACCACCACTGTCCAGGGTCTCCTTGCCACTGGCAAAACCATCATTGACTCATCACCCCAACTTGATATCATTAAATCTGTTTCTTTCAAGTTGATCAGTCGTACCAACTCAAACAATCTTTTAGTTTCGGCTGGGAAAGTTGGAAAGGAAACCTATCTGGAAAACAATATTTCTGTGTTACGAACATGGGGAGAGAGAGCGGAGGAATTTGATATTTATTTTGAATGGGATGATAAAGAAATGGGAATTCCAGGAGCATTTTACGTAAAAAGCCTAATGGATAACGAGTTTTTACTTGTTAGTGTGACTCTTGAATATCCAACTCAAAGAAATGAGCACGACCATAACCACAACCAGAACTATATTCACTTTGACTGTAACTCCTGGGTTTACAACCATAAGTTTTACAAAACGGATCGCATTTTCTTTGCCAACATTCCATATCTTCCTGGTAAGACACCGGAGCAATTAAAAGCGTACAGAGAAGAAGAGTTGAAGAATTTAAGGGGAGATGGAAAAGGAAAGCGTGAGAAATGGGATAGGATTTATGATTATGATGTCTATAATGATCTGGGCTTTCTTGAAAGCGATGGACCACAAGATCACCCAGTTCTTGGAGGTCTCAAATATCCCTACCCTCGTAGGCTTAGGACTGGGAGAAACCTCATCCACAATAACAAAAATGGTGAAGAATACGAGGTACCAGGCGAGGTTAATTATTATGTGCCAAGAGATGAAGATTTCAGTCAGGAGAAGACTGTAGAATTCCTTTCATTAGGAAGGACAAATTTAGCTGGAAGAGTCGAACCTTTGCTCCTTTCTTTATATTTAAAGATCACATCAAATGAATTTACTGGCTTCGAAGAAGTGGATAAAATGTATGAAGGTGGAGTTCATCTGCCTCTGTCTATCACTGCCAACGGTACGCCGAGTGTTATCACTGGCAACGGTATTCCGACTGTCATTGACTTCCCACTACCCGCTGTAATTAAAGAAAGCAAGTTTGCATGGATGACTGATGAAGAGTTTGCAAGAGAGATGATTGCCGGTGTAAACCCTGCTGTAATTCGCCTCCTTAAAAAGGAGGAGCTCGCATTGCCAAGGAACACATCATGCAACTGTGTTCAACAAAGTACAGTAACAAAAGAAACTCTGGAGAGTAACATGAATGGGGTCAAAGTAGATGAGGTATATGATATTAACAAAGTGATCACTGAACTTAAATTTGTGGAACAGGCATTTGCTGATAGGAGATTGTTCATATTGGATTACTATGACGCATTCATGGCGTATTTGACGAAGATAAATGAGCTTCCTTCTGCAAAGGCTTATGCGACCAGGACATTCTTGTTCTTGAAAGATGATGGGACATTGAAACCACTTGCTATTGAATTAAGCAAGCCACATCAATGTCCATGTGATCATCCGAATGTCGAGACTACAGTGGTGCTGCCTGCAGACAAAGGTGTTGAAAGTACAATTTGGCAACTGGCCAAAGCTCATGTTACTGTAAATGACACCAACTATCATCAAGTCATTAGCCACTGGTTACATACTCATGCAGTGATGGAGCCATTTTCCATAGCAACACACAGGAATCTCAGTGTACTTCACCCCATTTATAAACTCCTTCATCCTCACTTCCGTGACACCATAAATATCAATTCACTTGCCAGGAAATCCCTAATTAATGCGGGTAGCGTTATAGAGCAATCTTTTTTGCCTGGACCGTATTCAATGGAGATGACTTCTGCTGTATACAAGAATTGGGTTTTCACTGACCAAGCTTTACCAAAGGATCTCATCAAAAGAGGGTTGGCGGTCGAGGATATCACTGCCCCTCATGGCCTTAGCCTTGCGATAGAGGACTATCCTTATGCTGTTGATGGACTAGAAATATGGAATGCTACTAAGAATTGGGTACAGGAGTATGTGTTTCTGTACTATTCAGAAGAGGGGGCAGTTCAAAGAGATACTGAATTGCAAGCATGGTGGAAGGAAGCTGTGAAGAAGGGTCATGGTGACTTAAAAGCAGATCTATGGCCTAAAATGCATACTTCTAATGATCTGGTGGAGATTTGCACTACCATTATATGGATTGCTTCAGCTCTTCATGCCGCTGTTAATTTTGGACAGTATCCTTATGGAGGTTATATCATGAACCGTCCTACACAAAGCCGAAGATGGATTCCAAAACCAGGAACTCAAGAGTATGATGAGATGAGCAAGAATCCTCAAGAAGCTTTTCTGAAAACAATTACTCCAAAGTACCAGACTGTTATGGATCTTACAGTGATGGAGCTACTATCAACGCATGCTACGGACGAGGTATATCTTGGACAAAGGAACAGTCTGAATTGGACTGCTGATCAACATGCAAAAGAAATATTTCAAGAATTTACAGAAAACCTAGCAAAAATTGAGAAAGAAATCTCGGACAGGAACAACAACCAAGAACTCAGAAACCGAACCGGACCAATCAAATTGCCTTATACTGTGCTTCTTCCTACGAGTGAACCGGGGATGACTTTCAGAGGAATCCCTAACAGTGTCTCTATCTAA 2802 0.4065 MKLVFILEIFPTGLVYSLILHIVSCINTRDYIASSDLTTLRYQAQKLYILAIAMSLRIVEKKKLVKGRVVLIRKNVVQTMTTTVQGLLATGKTIIDSSPQLDIIKSVSFKLISRTNSNNLLVSAGKVGKETYLENNISVLRTWGERAEEFDIYFEWDDKEMGIPGAFYVKSLMDNEFLLVSVTLEYPTQRNEHDHNHNQNYIHFDCNSWVYNHKFYKTDRIFFANIPYLPGKTPEQLKAYREEELKNLRGDGKGKREKWDRIYDYDVYNDLGFLESDGPQDHPVLGGLKYPYPRRLRTGRNLIHNNKNGEEYEVPGEVNYYVPRDEDFSQEKTVEFLSLGRTNLAGRVEPLLLSLYLKITSNEFTGFEEVDKMYEGGVHLPLSITANGTPSVITGNGIPTVIDFPLPAVIKESKFAWMTDEEFAREMIAGVNPAVIRLLKKEELALPRNTSCNCVQQSTVTKETLESNMNGVKVDEVYDINKVITELKFVEQAFADRRLFILDYYDAFMAYLTKINELPSAKAYATRTFLFLKDDGTLKPLAIELSKPHQCPCDHPNVETTVVLPADKGVESTIWQLAKAHVTVNDTNYHQVISHWLHTHAVMEPFSIATHRNLSVLHPIYKLLHPHFRDTININSLARKSLINAGSVIEQSFLPGPYSMEMTSAVYKNWVFTDQALPKDLIKRGLAVEDITAPHGLSLAIEDYPYAVDGLEIWNATKNWVQEYVFLYYSEEGAVQRDTELQAWWKEAVKKGHGDLKADLWPKMHTSNDLVEICTTIIWIASALHAAVNFGQYPYGGYIMNRPTQSRRWIPKPGTQEYDEMSKNPQEAFLKTITPKYQTVMDLTVMELLSTHATDEVYLGQRNSLNWTADQHAKEIFQEFTENLAKIEKEISDRNNNQELRNRTGPIKLPYTVLLPTSEPGMTFRGIPNSVSI 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03004 933 SMART LH2_4 63 225 IPR001024 GO:0005515
Vimu11g03004 933 Coils Coil 877 897 - -
Vimu11g03004 933 Gene3D - 415 567 - -
Vimu11g03004 933 FunFam Lipoxygenase 569 932 - -
Vimu11g03004 933 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 227 933 IPR013819 GO:0016702|GO:0046872
Vimu11g03004 933 ProSiteProfiles PLAT domain profile. 82 224 IPR001024 GO:0005515
Vimu11g03004 933 Pfam PLAT/LH2 domain 114 223 IPR001024 GO:0005515
Vimu11g03004 933 PRINTS Plant lipoxygenase signature 220 241 IPR001246 GO:0016491
Vimu11g03004 933 PRINTS Plant lipoxygenase signature 259 275 IPR001246 GO:0016491
Vimu11g03004 933 PRINTS Plant lipoxygenase signature 524 548 IPR001246 GO:0016491
Vimu11g03004 933 PRINTS Plant lipoxygenase signature 846 860 IPR001246 GO:0016491
Vimu11g03004 933 PRINTS Plant lipoxygenase signature 194 212 IPR001246 GO:0016491
Vimu11g03004 933 PRINTS Plant lipoxygenase signature 291 310 IPR001246 GO:0016491
Vimu11g03004 933 PRINTS Plant lipoxygenase signature 361 382 IPR001246 GO:0016491
Vimu11g03004 933 SUPERFAMILY Lipoxigenase 229 933 IPR036226 -
Vimu11g03004 933 Gene3D - 332 414 IPR027433 -
Vimu11g03004 933 PRINTS Lipoxygenase signature 590 607 IPR013819 GO:0016702|GO:0046872
Vimu11g03004 933 PRINTS Lipoxygenase signature 572 589 IPR013819 GO:0016702|GO:0046872
Vimu11g03004 933 PRINTS Lipoxygenase signature 610 630 IPR013819 GO:0016702|GO:0046872
Vimu11g03004 933 Pfam Lipoxygenase 237 916 IPR013819 GO:0016702|GO:0046872
Vimu11g03004 933 Gene3D - 229 331 - -
Vimu11g03004 933 ProSitePatterns Lipoxygenases iron-binding region signature 1. 590 604 IPR020833 GO:0016702|GO:0046872
Vimu11g03004 933 PANTHER LIPOXYGENASE 85 933 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g03004 933 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 65 228 IPR036392 GO:0005515
Vimu11g03004 933 ProSitePatterns Lipoxygenases iron-binding region signature 2. 617 627 IPR020834 GO:0016702|GO:0046872
Vimu11g03004 933 Gene3D PLAT/LH2 domain 55 228 - -
Vimu11g03004 933 Gene3D - 568 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03004 Vimu-Chr11 49669285 49673442 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03004 65 933 Acyl Lipid Metabolism Gene Families AT3G22400 48.140 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03004 K15718 - gmx:100802685 1183.32