Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03001 ATGAGTCTAACAGTGGAAAGGAAGAAGTTGGTGAAGGGGAGGGTGGTATTGATCCGTAAAAATGTTGTTCAAACCATGACCACCGCTGTCCAGGGTCTGTTTGCCACTGGCAAAACTATCATTGACTCATCATCCCAACTTGATTTCACTAAATCTGTGTCTTTCAAGTTGATCAGTCGTACCAACTCAAACAATCATTTAGTTTCTGCTGGGAAAGTTGGAAAGGAAACCTATCTGGAAAACAATGTTTCTGTGTTACGAACATGGGGAGAGAGACCGGAGGAATTTGATATTTATTTTGAATGGGATGATGAAGAAATGGGAATTCCAGGAGCATTTTACGTAAAAAGCCTAATGGTAAACGAGTTTTTACTTGTTAGTGTGACTCTTGAATATCCAACTCTAAAAAATGAGTACGACCATAACCACGACCAGAACTATATTCACTTTGACTGTAACTCCTGGGTTTACAACCATAAGTTTTACGAAACGGATCGCATTTTCTTTGCCAACATTCCATATCTTCCTGGTAAGACACCGGTGCAATTAAAAGCGTACAGAGAAGAAGAGTTGAAGAATTTAAGGGGAGATGGAAAAGGAAAGCGTGAGATGTGGGATAGGATTTATGATTATGATGTCTATAATGATCTGGGCTTTCTTGAAAGCGATGGACCACAAGATCACCCAGTTCTTGGAGGTCTCAAATATCCCTACCCTCGTAGGCTTAGGACTGGGAGAAACCTCATCCACAATAACAAAAATGGTGAAGAATACGAGGTACGAGTCGAGGTTAATTATGTGCCAAGAGATGAAGATTTCAGTCAGGAGAAGACTGTAGAATTCCTTTCATTAGGAAGGACAAAATTAGCTGGAAGAATCGAACCTTTGCTCCTTTCTTTATATTTAAAGATCACATCAAATGAATTTACTGGCTTCCAAGAAGTGGATAAAATGTATGAAGGTGGAGTTGATCTGCCTCTGTCTATCAATGCCAACCGTACGCCGAGTGTTATCACTGGCAAGGGTATTCCGACTGTCATTGACTTCCCAGTACCCGCTGTAATTAAAGAAAGCAAGTTTGCATGGATGACTGATGAAGAGTTTGCAAGAGAGATGATTGCCGGTGTAAACCCTGCTGTAATTCGCCTCCTTAAAAAGGAGGAGCTCGCATTGCCAAGGAACACATCATGCAACTATGTTCAACAAAGTGGAGTAACAAAAGAAACTTTGGAGATTAACATGAATGGGGTCAAAGTAGATGAGGTATATGATATTAACAAAGTGATCACTGAACTTAAATTTGTGGAACAGGCATTTGCTGATAGGAGATTGTTCATATTGGATTACTATGACACATTCATGGCGTATTTGACGAAGATAAATGAGCTTCCTTCTGCAAAGGCTTATGCCACCAGGACATTCTTGTTCTTGAAAGATGATGGGACATTGAAACCACTTGCTATTGAATTATGCAAGCCACCTCAACGTTCAAGTGATCATCCGAATGTCGAGACTACAGTGGTGCTGCCTGCAGACAAAGGTGTTGAAAATACAATTTGGCAACTGGCCAAAGCTCATGTTACTGTAAATGACACCAACTATCATCAACTCATAAGCCACTGGTTACATACTCATGCAGTGATGGAGCCATTTGCCATAGCAACAAACAGGAATCTCAGTGTACTTCACCCCATTTATAAACTCCTTCATCCTCACTTCCGTGACACCATAAATATCAATGCACTTGCCAGGAAATCCCTAATTAATGCGGGTAGCATTATAGAGCAAACTTTTTTGCCTGGACCGTATTCAATGGAGATGTCTTCTGCTGTATACAAGAATTGGGTTTTCACTGACCAAGCTTTACCAAAGGATCTCATCAAAAGAGGGTTGGCGGTTGAGGATCCAACTGCCCCTCATGGCCTCAGACTTGCGATAGAGGACTATCCTTATGCTGTTGATGGACTAGAAATATGGAATGCTACTAAGAATTGTGTACAAACGTATGTGAATCTGTACTATTCAGAAGAGGGGGCAGTTCAAGGAGATACTGAATTGCAAGCATGGTGGAAGGAAGCTGTGGAGAAGGGTCATGCTGACTTAAAAGCAGATCAATGGCCTAAACTGCATACTTCTAATGATCTGGTGGAGATTTGCACTACCATTATATGGATTGCTTCAGCTCTTCATGCCGCTGTTAATTTTGGACAGTATCCTTATGGTGGTTATATCATGAACCGTCCTACACAAAGCCGAAGATGGATCCCAGAACCAGGAACTGAAGAGTATGATGAGATGAGCAAGAATCCTCAAGATGCTTTTCTGAAAACAATTACTCCAAAGTATCAGACTGTTATGGATCTTACAGTGATGGAGCTACTATCAACGCATGCTTCGGACGAGGTATATCTTGGACAAAGGAACAGTCTGAATTGGACTGCTGATCAAAATGCAAAAGAAATATTTCAAGAATTTACAGAAAACCTAGCAAAAATTGAGAAAGAAATCTTGGACAGGAACCACAACCAAAAACTCAGAAACCGAACCGGACCAAACAAATTGCCTTATACTGTGCTTCTTCCTACGAGTGAACCGGGGATTACTTTCAGAGGAATCCCTAACAGTGTCTCTATCTAA 2637 0.4096 MSLTVERKKLVKGRVVLIRKNVVQTMTTAVQGLFATGKTIIDSSSQLDFTKSVSFKLISRTNSNNHLVSAGKVGKETYLENNVSVLRTWGERPEEFDIYFEWDDEEMGIPGAFYVKSLMVNEFLLVSVTLEYPTLKNEYDHNHDQNYIHFDCNSWVYNHKFYETDRIFFANIPYLPGKTPVQLKAYREEELKNLRGDGKGKREMWDRIYDYDVYNDLGFLESDGPQDHPVLGGLKYPYPRRLRTGRNLIHNNKNGEEYEVRVEVNYVPRDEDFSQEKTVEFLSLGRTKLAGRIEPLLLSLYLKITSNEFTGFQEVDKMYEGGVDLPLSINANRTPSVITGKGIPTVIDFPVPAVIKESKFAWMTDEEFAREMIAGVNPAVIRLLKKEELALPRNTSCNYVQQSGVTKETLEINMNGVKVDEVYDINKVITELKFVEQAFADRRLFILDYYDTFMAYLTKINELPSAKAYATRTFLFLKDDGTLKPLAIELCKPPQRSSDHPNVETTVVLPADKGVENTIWQLAKAHVTVNDTNYHQLISHWLHTHAVMEPFAIATNRNLSVLHPIYKLLHPHFRDTININALARKSLINAGSIIEQTFLPGPYSMEMSSAVYKNWVFTDQALPKDLIKRGLAVEDPTAPHGLRLAIEDYPYAVDGLEIWNATKNCVQTYVNLYYSEEGAVQGDTELQAWWKEAVEKGHADLKADQWPKLHTSNDLVEICTTIIWIASALHAAVNFGQYPYGGYIMNRPTQSRRWIPEPGTEEYDEMSKNPQDAFLKTITPKYQTVMDLTVMELLSTHASDEVYLGQRNSLNWTADQNAKEIFQEFTENLAKIEKEILDRNHNQKLRNRTGPNKLPYTVLLPTSEPGITFRGIPNSVSI 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03001 878 PRINTS Plant lipoxygenase signature 469 493 IPR001246 GO:0016491
Vimu11g03001 878 PRINTS Plant lipoxygenase signature 166 187 IPR001246 GO:0016491
Vimu11g03001 878 PRINTS Plant lipoxygenase signature 140 158 IPR001246 GO:0016491
Vimu11g03001 878 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Vimu11g03001 878 PRINTS Plant lipoxygenase signature 791 805 IPR001246 GO:0016491
Vimu11g03001 878 PRINTS Plant lipoxygenase signature 237 256 IPR001246 GO:0016491
Vimu11g03001 878 PRINTS Plant lipoxygenase signature 205 221 IPR001246 GO:0016491
Vimu11g03001 878 Gene3D - 513 877 - -
Vimu11g03001 878 ProSitePatterns Lipoxygenases iron-binding region signature 2. 562 572 IPR020834 GO:0016702|GO:0046872
Vimu11g03001 878 SMART LH2_4 9 171 IPR001024 GO:0005515
Vimu11g03001 878 ProSitePatterns Lipoxygenases iron-binding region signature 1. 535 549 IPR020833 GO:0016702|GO:0046872
Vimu11g03001 878 ProSiteProfiles PLAT domain profile. 28 170 IPR001024 GO:0005515
Vimu11g03001 878 Gene3D PLAT/LH2 domain 2 174 - -
Vimu11g03001 878 PANTHER LIPOXYGENASE 50 878 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g03001 878 FunFam Lipoxygenase 514 877 - -
Vimu11g03001 878 Coils Coil 815 835 - -
Vimu11g03001 878 Gene3D - 360 512 - -
Vimu11g03001 878 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 174 IPR036392 GO:0005515
Vimu11g03001 878 Gene3D - 175 276 - -
Vimu11g03001 878 Gene3D - 277 359 IPR027433 -
Vimu11g03001 878 Pfam Lipoxygenase 183 861 IPR013819 GO:0016702|GO:0046872
Vimu11g03001 878 PRINTS Lipoxygenase signature 555 575 IPR013819 GO:0016702|GO:0046872
Vimu11g03001 878 PRINTS Lipoxygenase signature 535 552 IPR013819 GO:0016702|GO:0046872
Vimu11g03001 878 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Vimu11g03001 878 SUPERFAMILY Lipoxigenase 175 878 IPR036226 -
Vimu11g03001 878 Pfam PLAT/LH2 domain 59 169 IPR001024 GO:0005515
Vimu11g03001 878 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 173 878 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03001 Vimu-Chr11 49625730 49629760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03001 9 878 Acyl Lipid Metabolism Gene Families AT1G55020 48.045 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03001 K15718 - gmx:100802685 1152.12