Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02983 GGTTTGTGTCCTTTGATAAAGAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCGACAAACAATTCAAAGTTAGCTTTTGAGAAGTTTGTATTTAGTAAGACTGTTAAGACAAATGCTCGTACCGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACTTGCATTTCTTTGTTACGGGTGGTGATGATGAAAATGAGCTCATTTTAGCATCGGTACTTCAAGGTTTCTTTGATGCAGTCACCCTTCTATTGAGGAGCAATGTAGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTGTTGTGTCTTGATGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGAACTCTTATTGCTGAAAAAGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGGTAAGGCAACTCTGTTTTGGCTTGGTTTCTGTTATTAACGTGTGTTTTCTGTTGGGCTGTACAACACAATTGCACAAAATCTGCCATATAGATCGAAGATGGTTAGACACTGACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGATGCTTGCATACACCAAAAATGCTTATTGTTGA 669 0.3946 GLCPLIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTVKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGTLIAEKVTSHSLDADAPLSEQVRQLCFGLVSVINVCFLLGCTTQLHKICHIDRRWLDTDSSLGYSQRTFDKNPFKMMLAYTKNAYC 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02983 222 CDD Zeta-COP 7 142 - -
Vimu11g02983 222 Pfam Clathrin adaptor complex small chain 6 145 IPR022775 -
Vimu11g02983 222 Gene3D - 2 146 - -
Vimu11g02983 222 PANTHER ZETA-COAT PROTEIN 3 160 IPR039652 GO:0006890|GO:0030126
Vimu11g02983 222 FunFam Coatomer subunit zeta-2 1 146 - -
Vimu11g02983 222 SUPERFAMILY SNARE-like 6 147 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02983 Vimu-Chr11 49477904 49480046 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02983 K20472 - gmx:547466 287.73