Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02974 ATGACTATGTTCATCTCTACCATTTATCTATTGACTCTCTTTTCTTCCATTTATGGTACTGCAGCTACCAATCTTCACACTTTTTCTTCTGATTCTTATAATCAACCTTACAGAACAGCTTATCACTTTCAACCTCCCAAGAATTGGATAAATGTTTCTTCTTGTTTTTTGTCATCTGACATGCTAAATGGACATGTGGGTGTGTTTGGACTTGCAGATCCCAATGGACCATTGAGATATGAAGGACTCTATCACCTGTTCTATCAGTACAATCCTAAAGGTGCAGTTTGGGGAAATATTGTGTGGGCACATTCAGTGTCAAAGGATCTTGTGAACTGGGCCCCACTAGATCCTGCAATCTTCCCATCTCAGCCGTCTGATATAAATGGTTGTTGGTCAGGATCAGCCACACTGCTACCTGGTAATAAACCAGCCATTTTATACACTGGAATTAACCCAAAGAATCAACAAGTCCAAAACTTGGCCAAGCCTAAAAATTTGTCTGACCCTTTTCTCAGGGAATGGGTGAAGTCTCCAAAAAACCCTCTAATGGCACCAACCAGTGCTAATGAGATCAATTCAAGTTCGTTTAGGGATCCCACCACTGCTTGGCTAGGCCAAGATGGGCATTGGAGAGTACTTGTAGGAAGCAAAAGAAGAACTAGAGGAATGGCACTTTTGTATAGGAGCAAAGATTTTTCTGATTGGATTCAAGCAAAACACCCTTTGCATTCAACTCTAGGCAGTGGAATGTGGGAGTGTCCTGATTTTTTCCCAGTTTTGAAGAATGGCCAATTGGGTGTTGACACATCTGTAAATGATGATTATGTCAGGCATGTGCTGAAGGCTAGTTTGGATGACAGAAAACATGATTACTACATGATAGGGAGCTACAATGCTGCCAAAGATAAGTTTATCCCAGATAAAGGGTTTGAAGAATTTGTTTTAAGATATGATTATGGAAAATACTATGCCTCAAAGACTTTCTTTGATGATGGAAAGAAGAGAAGGGTTTTGCTTGGGTGGGTGAACGAATCATCAAGTGTTGCTGATGATATCAAGAAAGGATGGGCTATTTGGCTGCATAAGTCTGGTAAACAATTGGTACAGTGGCCAGTAGAGGAAATTGAAAAGCTACGAGCAAAACCAGTCAATTTGCCACCCCAAGCCTTAAAAGGAGGCAAGTTGCTTCAAATTAATGGTGTCACAGCAACACAGGCTGATGTTGAAATTTCATTTGAAGTAAGTGGTGAATTGGGAAAGGCTGAAAATTTGAAGTATTGGACTGACCCCCAAATTCTATGTAGCACAAAGGGTTCATCCCTCAGAAGTGGATTGGGTCCTTTTGGTTTGCTGGTTTTTGCTTCAGAGGGATTGCAAGAGTTCACATCAGTTTTCTTCAGAATATTCAGATACCAACACAAATATTTGGTACTCTTTTGCAGTGACCAGAGCAGGTCTTCCTTAAATAAGAACAACGATTTGACCACTTATGGAACTTTTGTTGACGTGAATCCTCTTCAGGAGAAGCTCTCATTGAGAACCTTGATTGATCATTCAGTGGTAGAGAGTTTTGGAGGAGAAGGAAGAGGGTGCATCACTGCCAGAGTTTATCCTACATTAGCAATAAATGATAAAGCACAAATATATGCTTTCAATAATGGTACTGCAGATGTCAAGATTACAAGATTCAGTGCTTGGAGCATGAAGAAAGCACACATACTGTGA 1728 0.4039 MTMFISTIYLLTLFSSIYGTAATNLHTFSSDSYNQPYRTAYHFQPPKNWINVSSCFLSSDMLNGHVGVFGLADPNGPLRYEGLYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWAPLDPAIFPSQPSDINGCWSGSATLLPGNKPAILYTGINPKNQQVQNLAKPKNLSDPFLREWVKSPKNPLMAPTSANEINSSSFRDPTTAWLGQDGHWRVLVGSKRRTRGMALLYRSKDFSDWIQAKHPLHSTLGSGMWECPDFFPVLKNGQLGVDTSVNDDYVRHVLKASLDDRKHDYYMIGSYNAAKDKFIPDKGFEEFVLRYDYGKYYASKTFFDDGKKRRVLLGWVNESSSVADDIKKGWAIWLHKSGKQLVQWPVEEIEKLRAKPVNLPPQALKGGKLLQINGVTATQADVEISFEVSGELGKAENLKYWTDPQILCSTKGSSLRSGLGPFGLLVFASEGLQEFTSVFFRIFRYQHKYLVLFCSDQSRSSLNKNNDLTTYGTFVDVNPLQEKLSLRTLIDHSVVESFGGEGRGCITARVYPTLAINDKAQIYAFNNGTADVKITRFSAWSMKKAHIL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02974 575 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 29 573 - -
Vimu11g02974 575 SMART glyco_32 42 529 IPR001362 GO:0004553|GO:0005975
Vimu11g02974 575 Pfam Glycosyl hydrolases family 32 C terminal 375 568 IPR013189 -
Vimu11g02974 575 Pfam Glycosyl hydrolases family 32 N-terminal domain 72 372 IPR013148 -
Vimu11g02974 575 Gene3D - 383 569 - -
Vimu11g02974 575 Gene3D Glycosyl hydrolase domain; family 43 16 60 IPR023296 -
Vimu11g02974 575 SUPERFAMILY Concanavalin A-like lectins/glucanases 372 572 IPR013320 -
Vimu11g02974 575 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 69 384 - -
Vimu11g02974 575 SUPERFAMILY Arabinanase/levansucrase/invertase 32 373 IPR023296 -
Vimu11g02974 575 CDD GH32_Fruct1-like 73 358 - -
Vimu11g02974 575 Gene3D Glycosyl hydrolase domain; family 43 70 382 IPR023296 -
Vimu11g02974 575 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 384 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02974 Vimu-Chr11 49404103 49408775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02974 80 574 Glycoside Hydrolase AT3G13790 63.353 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02974 K01193 - gmx:100777339 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00342 4 2476397 2479237 Vimu11g02974 11 49404103 49408775 PCT