Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02973 ATGATTGGAAGCTTCAACCAGACTGATTCAATTGAGTGCTGTGAAGCTGCAATGCAGAAATCTTATCCTCAGGAATCTGGTCCTGTCTTGAAGAAGTCAAAAACCAAAATTTTAGCTTCTCAAAATGTAGATTATTGTGAAATGGCAGAGAGCGAGGACAGGCTCAGTGACATGCCAGATTGTCTTATTCATCACATCTTGTCATTTCTGGAAACAAAGGATGCTATTCAAACTTCTGTTTTATCAAAGAGGTGGAGGTATCTTTGGGTTTCAGTTCCCTGCTTGAATTTCAGTAGCAAATCATTCACGCGGTTGGTTGACTTCAAGAAGTTTGTGCTGTGGGTTTTAAACCACCGTGATTCTTCTCATGTCAAACTTCTTGTTTACTATCGTTTTGGGGTAGATTATGCCACAGATCAACATCTATTGAATAAGGTTATTGAGTATGCAGCATCACATGGGGTTGAAGAAATCAAAATCAATCTCCGTGCAAAAACATCCGGTAGTCCTCCTGTTGAAATTCCTTTGTCTCTATTTTCTTGCCAATCTTTGAAAAAGCTTGAGTTAAAAGATTGCCATCCTACGAATGTGTCATCCCCTATAGGTTGCAAATCATTGGACTTGTTGCATCTGGAACAGTTTGCAATGGATCCTGCTGCTGCTGACTTTTCAAATCCATTTGCAAGTTTGGCAGAGCTATTTGGTTTTACAACGTTGACAACTCTGCATCTAAATAACTTCACTCTGTGTTACACAGGAATTGACTGTCTGGATCCATTTGCTAATTGTGTCCATATGAAGAATTTGCACTTAAGTGAAATGTCTTTTAAGTCAGATTTGAACCCTAAGGATTTTGTGATATCTGCTCCCAAACTCAGTAACTTGAGTCTAATGTGCAACCGCTTTAAATGCAAGATTGTAGTTGCTGCACCACAGCTTTCCAATTTCACTTACTTGTATTCTACACCTTGTGCTTTCTTTGAGTTCCGACTTCCATCTTTGGATGGCTTGATCATTGATATACATGAACCACATGATCGGTTTGAAAAATGTCGTCGAAGGAAAAGAGAGGAGACTCTACATGGTTTGATCAATATGTTACGGGGATTTCATAGTGCAGAAGCTGTTAAACTATCTTTCTGCACAGCTGCGGTTACTTGTGGGACTGCAGCCCTGTTAAAGCCAGAACGTTTACCTCCTAGTAAATTGAAGTCATTGAACTTTGGAGTGGGATCAACATATAAAATCTTCATCAACAACCTTGACCATATAACTGCCTACTTCCGCAATTGTTCTCAGCATGCAGACTTTGAGATTGTGGCTGTTTAG 1329 0.3958 MIGSFNQTDSIECCEAAMQKSYPQESGPVLKKSKTKILASQNVDYCEMAESEDRLSDMPDCLIHHILSFLETKDAIQTSVLSKRWRYLWVSVPCLNFSSKSFTRLVDFKKFVLWVLNHRDSSHVKLLVYYRFGVDYATDQHLLNKVIEYAASHGVEEIKINLRAKTSGSPPVEIPLSLFSCQSLKKLELKDCHPTNVSSPIGCKSLDLLHLEQFAMDPAAADFSNPFASLAELFGFTTLTTLHLNNFTLCYTGIDCLDPFANCVHMKNLHLSEMSFKSDLNPKDFVISAPKLSNLSLMCNRFKCKIVVAAPQLSNFTYLYSTPCAFFEFRLPSLDGLIIDIHEPHDRFEKCRRRKREETLHGLINMLRGFHSAEAVKLSFCTAAVTCGTAALLKPERLPPSKLKSLNFGVGSTYKIFINNLDHITAYFRNCSQHADFEIVAV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02973 442 Gene3D Ribonuclease Inhibitor 142 335 IPR032675 -
Vimu11g02973 442 Pfam F-box domain 55 91 IPR001810 GO:0005515
Vimu11g02973 442 CDD F-box_AtFBL13-like 55 89 - -
Vimu11g02973 442 Gene3D - 39 95 - -
Vimu11g02973 442 ProSiteProfiles F-box domain profile. 52 105 IPR001810 GO:0005515
Vimu11g02973 442 SMART fbox_2 58 98 IPR001810 GO:0005515
Vimu11g02973 442 SUPERFAMILY F-box domain 45 104 IPR036047 GO:0005515
Vimu11g02973 442 PANTHER OS11G0201299 PROTEIN 236 407 - -
Vimu11g02973 442 SUPERFAMILY L domain-like 174 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02973 Vimu-Chr11 49386294 49387708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02973 51 219 EF-hand Containing Proteins AT5G41840 31.053 2.49e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02973 - - vun:114167379 862.833