Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02967 ATGACTGATAGGGTTCATCCTTCTGCCAAAACCACCGCCAACGGCGGCCCCAAGCCAACATTCCCGGCCACAAAATCCCAACTTTCCGGCGCCAATCGCCCCACCTACCGCCCCCAACCTCCCCGCCGCCGCAGCCGCAGCCGCGGCTGCGTCTCCACCTTATGCTGCTACCTCTTCATGATCCTCCTGCTCCTCCTCCTTCTCATCGGCGGCGCCGGAACCGTCCTCTACTTCCTCTACCACCCACAACGCCCCTCCTTCTCCGTCACCTCTCTCAAACTCTCCTACTTCAACCTCACCTCTCCCTCCACCTTCAACGCCAAGTTCGACCTCACTCTCTCAACCACCAACCCCAACGACAAGATCCTCTTTTCCTACGACCCCACCTCCGTCTCCCTCCTTTACGACGACGCCACGATCGCCACCGCTACCATCCCCTCCTTCCTCCACCACCAGAAGAACACCACCGTCCTCGAGGCCTACGTCACGAGCACCGATGAAGAGGTGCAGAGCGACACCGTAACGGAACTGAAGAGGAGCACGAAGGGCAAGAGCGAGGTGGCGCTAAAGGTGAAGTTGGAGACGAAGGTGGAGGCCCAGATGGGTGTATTCCAAACCCCGGGCGTCGGAATCACCGTTTTGTGCGACGGCATCGCCGTGTCTCTCCCCGACGGCGAGAAACCGGCTTCGGCGTCGGTAGAGAATACGGCGTGCGAAGTGGATGCGAGGTTCAAAATCTGGAAATGGACTGTATATGGTAGGTTGTTGTCGAGCAGAAATTTTGTGAGCAAAGATATCAACTTTGGGGTTGGGGCTCGTGCTGCAATCCTCCAAGGCGTAACTCAGGTGGCTGATGCTGTGAAAGTAACCATGGGACCCAAGGGTCGCAATGTGATAATTGAGAGAAGCCGTGGGAATCCCAGGATCACGAAGGATGGTGTGACTGTGGCTAAAAGTATCAAATTTAAAGACAAAGAAAAAAATATCGGTGCTGATCTTGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGACGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCAATTGCTGCTGGCGTAAATGTTATGGACTTACGTAATGGAATAAATAAGGCAGTTGATGCTGTAATTACTGACTTGAAAAGCAGAGCATTGATGATAAGCACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCAAACGGGGAGCGTGATATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAGGGAGTCATTACTGTTGTTGATGGGAATACTTTGGATAACGAGTTGGAAGTGGTGGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGACCAGAAGACCCGCAAATGTGAATTGGAGAACCCCTTTATTCTTATCCATGACAAGAAAATTTCAGACATGAATTCACTGCTGAAAATACTGGAACTTGCAGTAACGAAAAAAAGACCACTCCTAGTTGTTGCTGAAGATGTAGAGAGTGATGCACTGGCTATGCTCATACTCAACAAGCATCATGCTGGGCTTAAGGTTTGTGCCATAAAAGCTCCTGGTTTTGGGGACAGTAGAAGGGCAAATCTAGATGATCTTGCAACTCTTACCGGAGGAGAGATACTGCATTTGGGTTCCCATCGGGTGCCTTGTTTTTACTTTTTCAAGATTTTAATAACTCTATTCAAGACCCAGCAATTGGGACTACAGCTTGTTGTGATCACAGAAGAGCGTGGTTTGTCCCTTGATAAAGTCCAATCAGAAATGCTTGGCACTGCAAGAAAGGTTACTGTCACCATTGATGACACTATTGTTCTACATGGTGGTGGGGATAAGAAGGCCATTGAAGAGAGATGTGAACAACTACGGACGGCTATGGAAAGGAGTTCTGCCGTGTTTGATAAAGAAAAAGCACAGGAACGACTATCGAAACTATCTGGTGGTGTAGCTGTTTTCAAAGTTGGAGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCTACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCAGGTGGTGGAGTTGCTCTCTTATATGCTACCAAAGCCTTGGATAACCTTCAAACTAAAAATGAGGATGAGAAAAGAGGAGTACAGATTATTCAGAATGCACTCAAGGCGCCTACATCTACAATAGCTTCCAATGCTGGTTTTGATGGTGCGTTGGTCCACAGTAAATTGTTGGAACAAGATGATCATAATTTAGGTTTTGATGCCGCCAAAGCAGGTGTCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCAGCCAGTGTTTCATTGCTACTCACTACAACCGAGGCAGCTGTGGTGGATAATCCACATGACAAAAATAAGCCTCCTAGTCGAGTGCCAGATATGGATGATTTGGACCTATAA 2514 0.4805 MTDRVHPSAKTTANGGPKPTFPATKSQLSGANRPTYRPQPPRRRSRSRGCVSTLCCYLFMILLLLLLLIGGAGTVLYFLYHPQRPSFSVTSLKLSYFNLTSPSTFNAKFDLTLSTTNPNDKILFSYDPTSVSLLYDDATIATATIPSFLHHQKNTTVLEAYVTSTDEEVQSDTVTELKRSTKGKSEVALKVKLETKVEAQMGVFQTPGVGITVLCDGIAVSLPDGEKPASASVENTACEVDARFKIWKWTVYGRLLSSRNFVSKDINFGVGARAAILQGVTQVADAVKVTMGPKGRNVIIERSRGNPRITKDGVTVAKSIKFKDKEKNIGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRNGINKAVDAVITDLKSRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVVDGNTLDNELEVVEGMKLTRGYISPYFITDQKTRKCELENPFILIHDKKISDMNSLLKILELAVTKKRPLLVVAEDVESDALAMLILNKHHAGLKVCAIKAPGFGDSRRANLDDLATLTGGEILHLGSHRVPCFYFFKILITLFKTQQLGLQLVVITEERGLSLDKVQSEMLGTARKVTVTIDDTIVLHGGGDKKAIEERCEQLRTAMERSSAVFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALDNLQTKNEDEKRGVQIIQNALKAPTSTIASNAGFDGALVHSKLLEQDDHNLGFDAAKAGVYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDNPHDKNKPPSRVPDMDDLDL 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02967 837 MobiDBLite consensus disorder prediction 1 47 - -
Vimu11g02967 837 SUPERFAMILY GroEL apical domain-like 444 561 IPR027409 -
Vimu11g02967 837 Pfam TCP-1/cpn60 chaperonin family 283 817 IPR002423 GO:0005524
Vimu11g02967 837 ProSitePatterns Chaperonins cpn60 signature. 697 708 IPR018370 GO:0005524|GO:0006457
Vimu11g02967 837 Pfam Late embryogenesis abundant protein 112 211 IPR004864 -
Vimu11g02967 837 SUPERFAMILY GroEL-intermediate domain like 398 464 IPR027410 -
Vimu11g02967 837 SUPERFAMILY GroEL equatorial domain-like 267 815 IPR027413 -
Vimu11g02967 837 Gene3D GroEL 451 667 IPR027409 -
Vimu11g02967 837 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 258 561 IPR001844 GO:0042026|GO:0140662
Vimu11g02967 837 MobiDBLite consensus disorder prediction 1 34 - -
Vimu11g02967 837 SUPERFAMILY LEA14-like 62 163 - -
Vimu11g02967 837 CDD GroEL 264 817 IPR001844 GO:0042026|GO:0140662
Vimu11g02967 837 SUPERFAMILY GroEL apical domain-like 591 668 IPR027409 -
Vimu11g02967 837 Gene3D - 323 812 IPR027413 -
Vimu11g02967 837 Hamap Chaperonin GroEL [groEL]. 262 835 IPR001844 GO:0042026|GO:0140662
Vimu11g02967 837 FunFam 60 kDa chaperonin 452 566 - -
Vimu11g02967 837 Gene3D - 78 208 - -
Vimu11g02967 837 MobiDBLite consensus disorder prediction 817 837 - -
Vimu11g02967 837 Coils Coil 631 651 - -
Vimu11g02967 837 Coils Coil 718 738 - -
Vimu11g02967 837 Gene3D - 397 702 IPR027410 -
Vimu11g02967 837 PRINTS 60kDa chaperonin signature 642 667 IPR001844 GO:0042026|GO:0140662
Vimu11g02967 837 PRINTS 60kDa chaperonin signature 287 313 IPR001844 GO:0042026|GO:0140662
Vimu11g02967 837 PRINTS 60kDa chaperonin signature 690 711 IPR001844 GO:0042026|GO:0140662
Vimu11g02967 837 PRINTS 60kDa chaperonin signature 343 370 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02967 Vimu-Chr11 49334844 49344069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02967 36 239 EF-hand Containing Proteins AT5G21130 25.701 2.02e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02967 K04077 - mnt:21388585 885.174