Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02960 ATGGCGGATAGAGAGTCTTGTTGTTCAACTCAGCTTATTGACGGAGATGGTGTATTCAACGTCTCTGGGGTTGAAAACTTTATGAAGGAGGTGAAGTTGGCTGAATGTGGGCTTTCGTATGCTGTAGTTTCTATAATGGGTCCACAAAGTAGTGGCAAGAGCACACTATTAAATAATTTGTTTGGTACCAACTTCAGAGAGATGGATGCTTTCAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGCAATGGCATAGAGCCTTGTACACTTGTTATGGATTTGGAGGGTACTGACGGAAGAGAACGCGGAGAGGATGACACTGCCTTTGAAAAGCAGAGTGCTTTATTTGCTCTTGCTGTATCAGATATTGTGTTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTAAAAACCGTCTTTCAAGTCATGATGAGATTGTTTAGTCCACGAAAAACAACACTGTTGTTTGTCATACGTGATAAAACAAGGACGCCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGATTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCATTAAGTGAATTTTTCAACGTTGAAGTTGTTGCTCTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAGAGAGCAGGTTGCCAGTTTGCGGCAACGATTCCATCATTCCATTGCTCCTGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGATTTTCATTTAGTTGTCAGGAAATATGGAAAGTCATTAAGGAGAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTACGATGTGAAGAAATCACTGACGAGAAATATGCCTCTTTTTCTGCAAATGAGGATTGGTGTCAATTGGAAGAGGCTGTGCAATCTGGCCCTGTTCCTGGATTTGGAAGAAAGCTCAGTTCACTCCTTGGTACTTGTTTATCAGAGTATGATGCTGAAGCTGCCTTTTTTGATGAAGGTGTGAGAACTGCCAAACAAAAGCAACTACAAGAAAAATTGTTCCAACTTGTCCTTCCTGCATTCCAATCTGCGTTGGGACATATAAGATCTGGAACTTTGGATAAATTCAAGGTGACATTTGAAAAGGCTTTGAATGGTGGTGAAGGGTTTTCTGAGGCTGCTAGGAAATGCAGTGAGTTTTGTATGGTTCAATTTGACGAAGCATGTGCAGATATTGTTATCGAACAAGCAAACTGGGATACATCTAAAGTGCGAGAGAAATTGCTGCGGGACATTGATGCACATATTGCAGCTGTGCGTGCAACCAAGATTTCTGAACTTACTTCATTATATGAGGAAAAACTTAAACAAGCTTTGTGTGGACCTGTGGAAGCTCTTTTGGACGGAGCTAATAGTGATACTTGGTCATCAATAAGGAACCTTCTTAGGCGTGAGACTTTATCAGCCGTTTCAGGGTTCTCTGCTGCACTTATTGGGTTTGATATGGATGAAGAAACAAGACAGAAAATGCTTAAAAGTTTAGAGGATTATGCAAGAGGTCTGATAGAAGGAAAGGCTAAGGAAGAAGTAGGAAGAGTTCTAATCCGTATGAAGGATAGGTTTACAATGTTGTTTAGTCATGATGCTGATTCAATGCCTCGTGTTTGGACTGGTAAAGAAGATATACGATCCATCACCAAGACTGCTCGATCTGCTTCTTTGAAGTTGCTATCTGTCATGGCTGCAATCCGTTTGGATGATGATGACACTGACAATATTGAGAAAGTGTTAGCAGTCGCTTTGGTGGAACCATCACCAAGCAGTAATGGTACAAGGAGCATGACAGTGGTTGATCCACTAGCTTCTAGCAGCTGGGAAGAGGCTTCAAATGTATATTATGGTTTCTCTGGTTACATTTTGAGAGCATTTTCTATCCTGGGCACTGACCTGTGTGCAAGTCTTTGTGGAGGCAATTCAGGACAGAGACAGAGTACACTGTCTCTCAAGCCATTGCTGCACAGGCATGATGTTTCTTATTTATTAAAGACTTTTAAGGAAGCAAGCAAGCGCAACAACAACTGGTTACCTCCCCCTTGGGCGATAGCTGCTATGGTTATCCTAGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGTTATCTTCTTATTAAAGCTCTATGGGTGCAACTTGACATTTCGGGAGAATTTCGCAATGGAGCCCTTCCGGCAATCATTTCCTTGTCTACCAAGTTTGTACCAACTATCATGAACCTTATGAAAAAACTAGCAGAGGAGGGACAGAACCATGCAGCTAACAATCCTCAGAGAACCCCATCAAAAAACAGTTACAGTGACAGTCAAGCCGTCTCATCGAGCGCCTCATCTAACCTGACTGCATTGGACAACGGAACGGAGTATGAGGGCCCAGTTAAAGATGAGTAG 2496 0.4219 MADRESCCSTQLIDGDGVFNVSGVENFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWMARCNGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSYEEKEEQFREQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSCQEIWKVIKENKDLDLPAHKVMVATVRCEEITDEKYASFSANEDWCQLEEAVQSGPVPGFGRKLSSLLGTCLSEYDAEAAFFDEGVRTAKQKQLQEKLFQLVLPAFQSALGHIRSGTLDKFKVTFEKALNGGEGFSEAARKCSEFCMVQFDEACADIVIEQANWDTSKVREKLLRDIDAHIAAVRATKISELTSLYEEKLKQALCGPVEALLDGANSDTWSSIRNLLRRETLSAVSGFSAALIGFDMDEETRQKMLKSLEDYARGLIEGKAKEEVGRVLIRMKDRFTMLFSHDADSMPRVWTGKEDIRSITKTARSASLKLLSVMAAIRLDDDDTDNIEKVLAVALVEPSPSSNGTRSMTVVDPLASSSWEEASNVYYGFSGYILRAFSILGTDLCASLCGGNSGQRQSTLSLKPLLHRHDVSYLLKTFKEASKRNNNWLPPPWAIAAMVILGFNEFMTLLRNPLYLGVIFVGYLLIKALWVQLDISGEFRNGALPAIISLSTKFVPTIMNLMKKLAEEGQNHAANNPQRTPSKNSYSDSQAVSSSASSNLTALDNGTEYEGPVKDE 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02960 831 MobiDBLite consensus disorder prediction 786 820 - -
Vimu11g02960 831 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Vimu11g02960 831 MobiDBLite consensus disorder prediction 785 831 - -
Vimu11g02960 831 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Vimu11g02960 831 Coils Coil 218 238 - -
Vimu11g02960 831 PANTHER PROTEIN SEY1 5 801 IPR008803 -
Vimu11g02960 831 CDD GBP 36 239 - -
Vimu11g02960 831 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Vimu11g02960 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 277 IPR027417 -
Vimu11g02960 831 Gene3D - 20 248 IPR027417 -
Vimu11g02960 831 Pfam Sey1 three-helix bundle domain 695 783 IPR046758 -
Vimu11g02960 831 Pfam Sey1 three-helix bundle domain 323 637 IPR046758 -
Vimu11g02960 831 Hamap Protein SEY1 [SEY1]. 9 788 IPR008803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02960 Vimu-Chr11 49298741 49309714 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02960 K22698 - gmx:100777656 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00323 4 2370221 2372158 Vimu11g02960 11 49298741 49309714 PCT