LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g02950	ATGGAGTTTCCGCAGACAGGTGTATCGCTGAGATCGAGCTTGACGATCGGAGAGACGCTGTGTGCGGTGTTCATTCCGCTCATAGGACTTGTTGAAGCTTTGGTTTTCAGCTTAGCTGGTTGCTTCGATTTCCATTCTCCGGCGAAGAAGAAGAAACCCTCTTCTACTACCTTCGAAGACATTCTTGCCCTCGCCAAGGGCTCTCCGTGTTCGTTTTTCTTTTTAATTTCATTTTCAGCTGTTTTTGTTTATTTTGATGGGGAAATGGCGTTTAAAGTTTCTGATTTGTGTGTGGCAGTTACTGTTAATGAAATTGAGGCTTTGCATGAGTTGTTCAAGAAGTTGAGTAACTCAATCTTTGAGGATGGTCTCATCCACAAGGAAGAACTCACATTGGCCCTGTTGAAAACCACAACTAAGGAGAATCTTTTCCTTGACAGGGTGTTTGATGTTTTCGATGAAAAAAGAAATGGTGTTATAGAATTTGATGAGTTTGTGCATGCTCTCAGTATCTTTCATCCTTGTACTTCTCTGGAAAAGAAAATTGACTTTTCTTTTAGAATGTATGACTTGAGACAGACAGGATATATTGAGCGAGAAGAAGTTAGACAAATGGTTGTTGCCATTTTGTCAGAATGTAGCATCGATATAAAAGATGAAGCCCTTGATTCCATTATTGATAAGACATTTGAAGAAGCCGATACTGATAAAGATGATAAAATAAGCAAAGAAGAATGGAAGACATTTGTCACTCGACGCCCAACACTCTTGAAGCACATGACTCTTCCTGATCTGGCGTAA	801	0.4007	MEFPQTGVSLRSSLTIGETLCAVFIPLIGLVEALVFSLAGCFDFHSPAKKKKPSSTTFEDILALAKGSPCSFFFLISFSAVFVYFDGEMAFKVSDLCVAVTVNEIEALHELFKKLSNSIFEDGLIHKEELTLALLKTTTKENLFLDRVFDVFDEKRNGVIEFDEFVHALSIFHPCTSLEKKIDFSFRMYDLRQTGYIEREEVRQMVVAILSECSIDIKDEALDSIIDKTFEEADTDKDDKISKEEWKTFVTRRPTLLKHMTLPDLA	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g02950	266	ProSiteProfiles	EF-hand calcium-binding domain profile.	140	175	IPR002048	GO:0005509
	Vimu11g02950	266	ProSitePatterns	EF-hand calcium-binding domain.	234	246	IPR018247	-
	Vimu11g02950	266	Pfam	EF-hand domain pair	180	250	IPR002048	GO:0005509
	Vimu11g02950	266	ProSiteProfiles	EF-hand calcium-binding domain profile.	177	212	IPR002048	GO:0005509
	Vimu11g02950	266	SMART	efh_1	144	172	IPR002048	GO:0005509
	Vimu11g02950	266	SMART	efh_1	225	253	IPR002048	GO:0005509
	Vimu11g02950	266	SMART	efh_1	181	209	IPR002048	GO:0005509
	Vimu11g02950	266	FunFam	calcineurin B-like protein 3	92	266	-	-
	Vimu11g02950	266	SUPERFAMILY	EF-hand	100	264	IPR011992	-
	Vimu11g02950	266	ProSiteProfiles	EF-hand calcium-binding domain profile.	221	256	IPR002048	GO:0005509
	Vimu11g02950	266	Pfam	EF-hand domain pair	121	166	IPR002048	GO:0005509
	Vimu11g02950	266	PRINTS	Recoverin family signature	195	213	-	-
	Vimu11g02950	266	PRINTS	Recoverin family signature	241	261	-	-
	Vimu11g02950	266	PRINTS	Recoverin family signature	148	169	-	-
	Vimu11g02950	266	CDD	EFh	181	251	IPR002048	GO:0005509
	Vimu11g02950	266	Gene3D	-	97	265	-	-
	Vimu11g02950	266	PANTHER	CALCINEURIN B	54	265	IPR045198	GO:0005509\|GO:0019722\|GO:0019900

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g02950	Vimu-Chr11	49239838	49242243	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g02950	9	229	EF-hand Containing Proteins	AT4G33000	52.036	3.25e-69	210

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g02950	K06268		-	gmx:100801943	347.821