Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02917 ATGAGTTATGTTAACATCATGGAGCGCTTGTTGGAACCTGAAAGAGTGATTGTTTTTAGGGTTTCTTGGGTGGATGATAGGGGCGTCACACATGTAAATCGGGGCTTTAGGGTACAATATAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCACCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGACTTTAAAGAATGCCTTATCACCATACAAATTGGGAGGAGCAGCTGGTGGGAGCGATTTTAATCCAAAAGGAAAAAGTGATAATGAGATTATGAGATTTTGCCAAAGTTTCATGAGTGAGATGTATCGCTACCTGGGGCCTGATAAGGACCTTCCATCCGAGGAAATGGGTGTTGGTACTCGAGAAATGGGGTATCTTTTTGGACAGTATAGACGTCTAGCTGGTCATTTTCAGGGAAGTTTTACAGGGCCAAGAATATTTTGGTCTGGTTCCAGTCTTCGACCTGAAGCTACTGGCTACGGGCTGGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGATTAAGATGTGTTGTGAGTGGTTCTGGAAAGATAGCAATGCATGTTTTAGAAAAGCTAATTGCTTATGGTGCTCTTCCTATTTCAGTATCAGATTCCAGAGGATATTTGGTTGATGAAGATGGATTTGACTACATGAAAATATCATTTTTGAGAGACATCAAAGCTCAGCAAAGAAGCTTGCGAGACTATTCAAAAACCTATGCTCGGTCCAAATATTACGATGAAGCAAAGCCATGGAATGAAAGGTGTGATGTTGCATTTGCCTGTGCTTCACAGAACGAAATTAATCAATCTGATGCCACTAATTTGGTCAATTCAGGTTGTCGTGTACTGGTTGAAGGTTCAAACATGCCTTGTACCCCTGAGGCAGTTCAGATTTTGAGGAAGGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCAGGTGCTGGAGGGGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCACCGGAGGACTTTGAATCTAAATTGCAGGATGCAATGAAGCAGACTTATCAGAGAGCTATCAAAGCTGCAACTGATTTTGGTTATCAAAAGGAAAGTCCCGAGGCTCTGGTGCATGGAGCAGTAATATCTGCCTTTCTAACCATTGCTCAAGCCATGACTGATCAAGGCTCTGTATAA 1227 0.4246 MSYVNIMERLLEPERVIVFRVSWVDDRGVTHVNRGFRVQYNQSMGPCRGGIRFHPSMNLSVAKFLGFEQTLKNALSPYKLGGAAGGSDFNPKGKSDNEIMRFCQSFMSEMYRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRPEATGYGLVFFAQLMLADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGALPISVSDSRGYLVDEDGFDYMKISFLRDIKAQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFACASQNEINQSDATNLVNSGCRVLVEGSNMPCTPEAVQILRKASVLIAPAMAAGAGGVVAGELELNHECSLMHWSPEDFESKLQDAMKQTYQRAIKAATDFGYQKESPEALVHGAVISAFLTIAQAMTDQGSV 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02917 408 Gene3D Glutamate Dehydrogenase, chain A, domain 3 337 408 - -
Vimu11g02917 408 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 406 IPR036291 -
Vimu11g02917 408 SMART ELFV_dehydrog_3 160 406 IPR006096 GO:0006520|GO:0016491
Vimu11g02917 408 FunFam NADP-specific glutamate dehydrogenase 338 408 - -
Vimu11g02917 408 FunFam Glutamate dehydrogenase 11 146 - -
Vimu11g02917 408 PANTHER NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED 2 408 - -
Vimu11g02917 408 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 159 406 IPR006096 GO:0006520|GO:0016491
Vimu11g02917 408 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 13 140 IPR006097 GO:0006520|GO:0016491
Vimu11g02917 408 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 328 339 IPR006095 GO:0006520|GO:0016491
Vimu11g02917 408 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 70 84 IPR006095 GO:0006520|GO:0016491
Vimu11g02917 408 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 149 171 IPR006095 GO:0006520|GO:0016491
Vimu11g02917 408 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 191 211 IPR006095 GO:0006520|GO:0016491
Vimu11g02917 408 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 4 160 IPR046346 -
Vimu11g02917 408 Gene3D Leucine Dehydrogenase, chain A, domain 1 11 146 - -
Vimu11g02917 408 PIRSF Glu_DH 2 408 IPR014362 GO:0016639
Vimu11g02917 408 Gene3D - 165 330 - -
Vimu11g02917 408 FunFam Glutamate dehydrogenase 165 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02917 Vimu-Chr11 48968244 48975794 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02917 6 286 EF-hand Containing Proteins AT5G07440 30.605 4.02e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02917 K00262 - gmx:100788009 788.104