Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02909 ATGCGAAACATTGAAGTTCGTCGATTTTGCACTCTGATAACCGAAGCAACCCACAGAACCCCAACAACGAAGCCATTCCTTCCCATACCTCACCGAACCCTTCCCGAACCTCGAGGCCAGGATCTGGACTTCATCACCGTCGCTCACAGTCACGTCGTGAACTCCCACTGGGAAAAGCTACATCCTTTGTGCTCCGTTCTCACACCCTTTCGTCTCAAACACCTCTTCCTCAACCTTCAAAACGACCACGTATTGTCCCTCAAACTTTCCCAATGGCTTCTCCAACACCACCCATCCACGCACACCCTCGAAACCCTCTCGTTCCTCCTCCACACCCTCGCCACACATCGCCAATTCAAAACCATCCAAACCATCCTCACAAAAATCCTCTCTTCACACCCTCCGCACACCCTCTTCGACTCTCTCTTACACTCCTACCCTATCTGCAATGCTTCTCCTCTCGTCTTCGAAGCCCTCTTCAAAACCCTCGCCCACGCCAGTAAATTCCGCAGCGCCACCCTCACTTATACCCTAATGAAGCAACACGGCTTCTCCCTCACCGTTGAATCCTGCAACGCCTTTTTAAGTTCTCTGCTTCGCCTCCGCAGAGCAGATATCGCGCTGTCGTTTTACCGGGAGATGCGTCGCTCTTATGTTTCGCCTAACGTCTACACTCTCAACATGGTTATTCGCGCTCATTGCATGTTGGGGGCAGTGCAGAAGGGCTTTGAGATTTTCCAGAAGATGGGGGACATGGGTTTGAGTCCTAATGTTGTGTCTTTCAATACTTTGATTTCGGGGTATTGTAACAAGGGGCTGTTTGGCTTGGCGTTAAAGGTTAAATCTTTGATGGGGGGTCATGGAGTGCAGGCTAATGTGGTTACTTTTAACACTCTGATTAATGGGTTTTGTAAGGAGAGGAAGTTGCATGAGGCGAATAGGGTTTTCAATGAGATGAAGGTTGCCAATGTGACCCCCAATGTTGTAACCTACAATACTTTGTTGCATGGGTATGGTCAGGTTGGAGACAGTGAAATGGGTGGGAAGGTTTACGAGGAGATGGTGAGGAATGGGGTTAAGGCTGATATATTAACTTATAATGCATTGATTTTGGGGCTGTGTAAGGATGGGAAGACAAAGAAGGCTGCAGGGTTTGTAAAGGAGCTTGATAAAGAGAACTTGGTTCCAAATGCGAGTACTTTTTCTGCTCTAATTACTGGGCAGTGTGTGAGGAACAATTCTGAGCGTGCCTTTCTTATTTATAGGAGCATGGTGAGGAGTGGTTGTAATCCAAATGAGCATACTTTTCAGATGCTGATATCTGCTTTTTGCAAGAATGAGGACTTTGATGGGGCTGTGCAGGTTTTGAGGGACATGCTGGGTAGATTGATAAGGCCAGATTCCAGCACGTTATCTGAGCTGTGTCATGGACTTCACAGGTGTGGGAAAAACCAGTTGGCATTGGCTCTGTGTAGCGAGATGGAAGCGAGGCGACTCTTGCCGGATGGGTTTGACAAAGAAAAATTATTCATCGTCCATCCTGAAAATGAGACAAGTAGCTGA 1563 0.4779 MRNIEVRRFCTLITEATHRTPTTKPFLPIPHRTLPEPRGQDLDFITVAHSHVVNSHWEKLHPLCSVLTPFRLKHLFLNLQNDHVLSLKLSQWLLQHHPSTHTLETLSFLLHTLATHRQFKTIQTILTKILSSHPPHTLFDSLLHSYPICNASPLVFEALFKTLAHASKFRSATLTYTLMKQHGFSLTVESCNAFLSSLLRLRRADIALSFYREMRRSYVSPNVYTLNMVIRAHCMLGAVQKGFEIFQKMGDMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMGGHGVQANVVTFNTLINGFCKERKLHEANRVFNEMKVANVTPNVVTYNTLLHGYGQVGDSEMGGKVYEEMVRNGVKADILTYNALILGLCKDGKTKKAAGFVKELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCNPNEHTFQMLISAFCKNEDFDGAVQVLRDMLGRLIRPDSSTLSELCHGLHRCGKNQLALALCSEMEARRLLPDGFDKEKLFIVHPENETSS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02909 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vimu11g02909 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Vimu11g02909 520 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 73 409 - -
Vimu11g02909 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vimu11g02909 520 Pfam PPR repeat 190 217 IPR002885 -
Vimu11g02909 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vimu11g02909 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Vimu11g02909 520 Gene3D Tetratricopeptide repeat domain 76 277 IPR011990 GO:0005515
Vimu11g02909 520 Pfam PPR repeat family 223 270 IPR002885 -
Vimu11g02909 520 Pfam PPR repeat family 292 338 IPR002885 -
Vimu11g02909 520 Pfam PPR repeat family 362 409 IPR002885 -
Vimu11g02909 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vimu11g02909 520 Pfam PPR repeat 428 459 IPR002885 -
Vimu11g02909 520 Gene3D Tetratricopeptide repeat domain 408 505 IPR011990 GO:0005515
Vimu11g02909 520 Gene3D Tetratricopeptide repeat domain 278 407 IPR011990 GO:0005515
Vimu11g02909 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vimu11g02909 520 NCBIfam pentatricopeptide repeat 365 398 IPR002885 -
Vimu11g02909 520 NCBIfam pentatricopeptide repeat 259 292 IPR002885 -
Vimu11g02909 520 NCBIfam pentatricopeptide repeat 400 433 IPR002885 -
Vimu11g02909 520 NCBIfam pentatricopeptide repeat 190 222 IPR002885 -
Vimu11g02909 520 NCBIfam pentatricopeptide repeat 434 467 IPR002885 -
Vimu11g02909 520 NCBIfam pentatricopeptide repeat 224 258 IPR002885 -
Vimu11g02909 520 NCBIfam pentatricopeptide repeat 294 328 IPR002885 -
Vimu11g02909 520 NCBIfam pentatricopeptide repeat 329 362 IPR002885 -
Vimu11g02909 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02909 Vimu-Chr11 48924703 48926265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02909 178 513 Glycosyltransferase AT1G05670 30.792 2.42e-44 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02909 - - gmx:100792776 811.216