Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02894 ATGGGGAGTTCTGAAGGGGTGGGAACATCGTCGAAGCAATATGGTATCACGAAACCCATTTCGATGGCTGGACCAACGGTTTATGATTTGCATAGAACTCTTGAGTTAGAAAAGTTTCTCGCTGTTTCGGGACTTTATGAGAACAATGAGGAAGCTGCTAAGAGAGAGGAGGTTCTTTACCGACTTGGACAGATAGTAAAACATTGGGTGAAGCAACTCACTCGCCTAAAGGGATACACTGATCAAATGGTGGAAGATGCAAATGCTATCATTATGACTTTTGGTTCTTATCGCCTTGGCGTTCATGGTCCTGGGGCTGACTTAGACACAATATGCATTGGACCTTCCTACGTGAATCGCGAGGAGGATTTTTTCTACACATTGCATGATATCCTAGCCAACATGGAGGAGGTCTCTGAATTGCAACCAATTCCTGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTTTATGCCAGTATTTCTCGCTTGATTGTACCTGATGACTTGGTTATATCTGATATCACTCTTCTACACAATGTTGACGAGCCTACTGTGCGAAGTTTAAATGGCTGCAGAGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATGTTGAGGTGACAGGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTGTGCCAGTTGTATCCAAATGCTGTTCCAAGTATGCTTGTTTCTCGATTCTTTAGGGTATATACACAGTGGGGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAAAATCAACTTGGTTTTTCTTTTTGGCATCCTCGTAAAAATCCTCGTGATCGATCCCATCTCATGCCAATTATTACTCCTGCCTATCCCTGTATGAACTCTAGTTATAATGTTTCTACAAGCACACTTCGTGTTATGATGGAACAATTCCAATTTGGCAACAAGATATGTGGGGATGTAGAATTGAACAAAGGTTGTTGGGAGGATCTGTTTGAACCATACAGTTTTTTTGAAAGTTATACAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGTTGATGACTTGCGCAATTGGAAAGGTTGGGTGGGATCACGCCTTCGGCAGTTGACCTTGATGATTGAGCGTGACACTTTTGGGAAGTTGCAGTGCCATCCCTATCATCATGAGTATATGGACACCTCAAGGCAGAGTGCACATTGTGCTTTCTTTGTGGGTTTACAGAGGAAGAAGGGAGAAGTAGTTCAAGAAGGCCAGCAATTTGATATACGAGGAACAATTGATGAATTTTTGCATGCAGTCAATATGTACATGTTCTGGAAACCAGAGATGGAGATTTTTGTTTCTCATGTTCGGAGAAGGCAAATTCCATGCTATGTGTTTCCTGATGGTTACAAAAGATTGCGATCATCAAGGCCAACCTCAACAACACGTGAGAATAATAAATCATTTCCTAAAAATGAGGTTTCTGGGACTGACAATGTTGAGAGAATTCGTAAGAGGAAGAACAATGATGGGTTGGGTGTGAGGGAGGATGCAACACTGAAAAAGCAATGTAGTACTCTTCCTGAAGGTAGAGGGGCAAATAGCAGTGTGTCTGATAGTCAACAGTTGTCAAGCAGTGAGCAAGAGTTGCGTAGAACGGAGTCTCCTGAACCTGCCTCTAATTCTAGTGGGTTTGCTTCCGTTACAAGTGATAGTGGTTCTTCTGAAGATATTGGAGCCGTATCTATGGCAGGTTGTGCTGAAGATAACACTGGGGGTGTTGATATGATGAACAACAATGGCAGGTTTGAGAGTAGTACTTACGAGAACGTTTCTGGCACACTGGTGAAGAACAGATTGACAAGTTCTGAGGGAGTATTTCAACACGAGCTACAGGTGCAGTTGCAGCAAAATGCAATGTTAGGGATGGTTCTTGATTCTACAGGAAAAGTTCATTCAGAGGAGACTGGGTGTGGCATCTGCAGTGTGAAGGATGAGCTTGCTTGGCCATTCAAGCTTGCAAATTTGCAACTGATCGCATCAAGCCGAAGAGCTGGAGCTGGGATTTGGGTAGGGAGAGAGCAAGGGCGAGGGTGGGAATTGGGTTATCTAGTGTTTTCTAGGAGAGGCTACTTTATGATA 2142 0.4309 MGSSEGVGTSSKQYGITKPISMAGPTVYDLHRTLELEKFLAVSGLYENNEEAAKREEVLYRLGQIVKHWVKQLTRLKGYTDQMVEDANAIIMTFGSYRLGVHGPGADLDTICIGPSYVNREEDFFYTLHDILANMEEVSELQPIPDAHVPVMKFKFDGISIDLLYASISRLIVPDDLVISDITLLHNVDEPTVRSLNGCRVADQILKLVPNVEVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWGWPTPVMLCPIEENQLGFSFWHPRKNPRDRSHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNKICGDVELNKGCWEDLFEPYSFFESYTNYLQVDVVAADVDDLRNWKGWVGSRLRQLTLMIERDTFGKLQCHPYHHEYMDTSRQSAHCAFFVGLQRKKGEVVQEGQQFDIRGTIDEFLHAVNMYMFWKPEMEIFVSHVRRRQIPCYVFPDGYKRLRSSRPTSTTRENNKSFPKNEVSGTDNVERIRKRKNNDGLGVREDATLKKQCSTLPEGRGANSSVSDSQQLSSSEQELRRTESPEPASNSSGFASVTSDSGSSEDIGAVSMAGCAEDNTGGVDMMNNNGRFESSTYENVSGTLVKNRLTSSEGVFQHELQVQLQQNAMLGMVLDSTGKVHSEETGCGICSVKDELAWPFKLANLQLIASSRRAGAGIWVGREQGRGWELGYLVFSRRGYFMI 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02894 714 CDD NT_PAP_TUTase 54 209 - -
Vimu11g02894 714 MobiDBLite consensus disorder prediction 474 578 - -
Vimu11g02894 714 SUPERFAMILY Nucleotidyltransferase 14 208 IPR043519 -
Vimu11g02894 714 Gene3D Beta Polymerase, domain 2 48 168 IPR043519 -
Vimu11g02894 714 SUPERFAMILY PAP/OAS1 substrate-binding domain 214 338 - -
Vimu11g02894 714 Pfam Poly(A) polymerase central domain 214 338 IPR007012 GO:0043631|GO:1990817
Vimu11g02894 714 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 339 467 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vimu11g02894 714 MobiDBLite consensus disorder prediction 528 577 - -
Vimu11g02894 714 Pfam Poly(A) polymerase predicted RNA binding domain 340 401 IPR007010 GO:0003723|GO:0043631
Vimu11g02894 714 Gene3D - 179 338 - -
Vimu11g02894 714 Pfam Nucleotidyltransferase domain 88 162 IPR002934 GO:0016779
Vimu11g02894 714 MobiDBLite consensus disorder prediction 497 517 - -
Vimu11g02894 714 Gene3D Poly(A) polymerase predicted RNA binding domain 340 456 - -
Vimu11g02894 714 FunFam Putative poly(A) polymerase gamma 210 336 - -
Vimu11g02894 714 Pfam Poly(A) polymerase central domain 15 213 IPR007012 GO:0043631|GO:1990817
Vimu11g02894 714 PANTHER POLY A POLYMERASE 9 502 - -
Vimu11g02894 714 MobiDBLite consensus disorder prediction 474 495 - -
Vimu11g02894 714 FunFam Poly(A) polymerase alpha, putative 47 203 - -
Vimu11g02894 714 FunFam Nuclear poly(A) polymerase 4 340 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02894 Vimu-Chr11 48786397 48790874 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02894 K14376 - gmx:100783237 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02894 11 48786397 48790874 Vimu11g02894 11 48786397 48790874 ECH