Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02870 ATGGAATCGAGTCGAAGAGCAGTGGAGTCGTACTGGCGGTCGCGGTTGATCGATTCAGCTACGTCCGATGAAGATAAAGTCACGCCCGTTTACAAATTGGAGGAAATCAGCGAGCTTTTGCGTTCTTCGCATGTTAGTATTGTGAAGGAGGTTTCGGAGTTTGTCTTAAAACGTTTGGAACATAAAAGCCCAATTGTGAAACAGAAGGCTTTAAGATTGATAAAGTATGTGGTTGGGAAGTCGGGCGTGGAGTTCAGAAGGGAAATGCAGAGACATTCAGTGGCGGTTCGTCAGTTGTTTCACTACAAGGGACAGTTGGATCCTTTGAAAGGCGATGCACTAAATAAGGCTGTGAGAGACACTGCTCACGAGGCTATCTCTGCCATCTTTTCAGAAGAGAATAGTAAGCCAGCACCCGCTGAAGATCTAAACCGGCGGATACAAGGGTTTGGGAATAAAAACTATGAACCGCCACAGGAAGATAAGAAATCTTTTATCAGTGAGGTTGTTGGTATTGGAAGTGCGTCAATTAAGCAAGGGCTTAATAGCTTAACACAGGGACATTCGCTGATGAAAAATGATCCCGGCAGCTATAAGAGTCCAAATCTTCGAAGATCGTTGACAAATGAAACAGAACATGGTGACAGATATGAACCAATTTCGTATCATAATGAAGCTCAGAGTAGTTTTGGAGGTTCAAAGAATCAATCTTCTGGTCCTTGGAATCAGGATTCAAGAGTAACTAAGACGGAAACATCAAATGGGGATTCTGGTGCAAGTTATGTAGAGAGTAAGACAAGAGAGCATAAGTTGCTGGAGACAATTGTAACTTCAGGAGGTGTTCGCCTGCAACCCACTCGTGATGCAATTCAAGCTTTCCTAGCGGAGGCTGCAAAGTTAGATGCATTGGCTTTATGTCATGCCCTTGAACTGAAGCTTCAATCTCCAATTTGGCAGGCATGTCTATTGATTTACAAATTATTTTCATTCCAAGTTCGCATGAAAGCTGTCTGTGTCCTTGAGTCCATTCTGAGGAAGAAGGATGATGATCATTTTTCACTGGTGGAATCTTACTTCACCGAAAATAGAGATGTGGTGCTGAGATGTTCTGAATCTCCGCAAGTCTCTTTACGGGAAAGGGCTGCAAAGGTTCTTAGTCTTTTAGGTGGAGGCCAGTCAAACAACTCTGCAATTAATTCAGAGAATGCTGTGAAAACAGAGAATGCTGCTGTTGTGGAGCTGCCTAATTTGATAGACACTGGTGATTCAGATGATTATCACGGAACTGAGGACACTCTAAACAGTGTAACAGATCAAAATATATCAACTTTGACATCCACTCCTCTGGTTGATGATTTATTTGGAGATTTCAGCAGCTCTATTGGGGCTAGTCAAGAAATAAAAAATGATGATGATCCATTTGCTGATGTTTCATTTCACACAAATGAGAACAAAGAAAATGCTGATGATCTCTTTTCTGGGATGACTGTTGGTAGTGATAAGCAGAGCAATCATGGGAGTCACAGGCAGGGGAATATCGGTGATCCTGAACTTTTTGACATTTTTACTTCCAATTCTGAGCACGGAAACCAGAAGGAGCTTGTCACTGATTTAATGGGTGGTCTATCAATGGATGAAAATACCTCAAGTACGACGCAGAAGGGAGCATCTCCTTCCATGCAATTTGAATCTTTATTTTCAGGCTTAACTAACCATATTCCTGGCAATACTTCAGATGGCATGTTGAGCTCTCAGCCAATGGGGTTGAATGTAAATCCCATTTTTCCTAATGGTACTCTGCCTTTTAATATGCAACCTGGCTTCATGTTGAACCAAGCTTATTCTTCTCAGCCTCTTAATTACGGTGCCATGGGAACTCTTTTGGCTCAACAGCAATTCTTAGCAACAATGGCTAATTTCCAACACCTTAATAATATCAACATGCGAGATGATGGTGTTGCTCAAATGGCTGGACCGAATGGAAAATCACCCTTGCCAGACATATTTCAACCAAATTTTCAAACTCAAACTCCTAGCTCAATGATCAACACCTCAAGGAAAGAAGAAACTAAAGCATTTGACTTTATCTCTGTAAGTTTGGTGTAA 2106 0.4174 MESSRRAVESYWRSRLIDSATSDEDKVTPVYKLEEISELLRSSHVSIVKEVSEFVLKRLEHKSPIVKQKALRLIKYVVGKSGVEFRREMQRHSVAVRQLFHYKGQLDPLKGDALNKAVRDTAHEAISAIFSEENSKPAPAEDLNRRIQGFGNKNYEPPQEDKKSFISEVVGIGSASIKQGLNSLTQGHSLMKNDPGSYKSPNLRRSLTNETEHGDRYEPISYHNEAQSSFGGSKNQSSGPWNQDSRVTKTETSNGDSGASYVESKTREHKLLETIVTSGGVRLQPTRDAIQAFLAEAAKLDALALCHALELKLQSPIWQACLLIYKLFSFQVRMKAVCVLESILRKKDDDHFSLVESYFTENRDVVLRCSESPQVSLRERAAKVLSLLGGGQSNNSAINSENAVKTENAAVVELPNLIDTGDSDDYHGTEDTLNSVTDQNISTLTSTPLVDDLFGDFSSSIGASQEIKNDDDPFADVSFHTNENKENADDLFSGMTVGSDKQSNHGSHRQGNIGDPELFDIFTSNSEHGNQKELVTDLMGGLSMDENTSSTTQKGASPSMQFESLFSGLTNHIPGNTSDGMLSSQPMGLNVNPIFPNGTLPFNMQPGFMLNQAYSSQPLNYGAMGTLLAQQQFLATMANFQHLNNINMRDDGVAQMAGPNGKSPLPDIFQPNFQTQTPSSMINTSRKEETKAFDFISVSLV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02870 701 ProSiteProfiles VHS domain profile. 20 89 IPR002014 GO:0035091|GO:0043130
Vimu11g02870 701 SMART VHS_2 13 148 IPR002014 GO:0035091|GO:0043130
Vimu11g02870 701 MobiDBLite consensus disorder prediction 225 263 - -
Vimu11g02870 701 CDD ENTH_like_Tepsin 13 132 IPR035802 -
Vimu11g02870 701 PANTHER UNCHARACTERIZED 5 698 IPR039273 -
Vimu11g02870 701 Gene3D - 2 139 IPR008942 -
Vimu11g02870 701 Pfam ENTH domain 16 129 IPR013809 -
Vimu11g02870 701 SUPERFAMILY ENTH/VHS domain 15 135 IPR008942 -
Vimu11g02870 701 MobiDBLite consensus disorder prediction 225 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02870 Vimu-Chr11 48599965 48603550 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02870 - - gmx:100790466 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02870 11 48599965 48603550 Vimu11g02870 11 48599965 48603550 ECH