Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02867 ATGTCTACACCCTTTGAACATGATTACATAGGCTTAGCAGAGACTCCATACATGGAGAAAAGCTGTGATAAGATATCCTCTTCAGTTTCGTCCAACCTTTCATCTGAGGATGAGAACAGTTCATCGCTGAACTTCAAGGAGACAGAGCTGAGGCTTGGTCTGCCAGGTTGTGAGTTTTCTGAGAACAAACCAGGAGCTGCAGGGATCTCTCTTTTTGGCAAGGATTTGCAGAGTAGTGGCTATTCTGCTTCCTCAATTCCTTCCAAGAACCTCAAGAGGGGTTTCTCTGATGCCATTAGTTCCTCCTCCTCCTCTTCTGGGAAATGGATTTTCTCAGGCAGTGATGCAACTGGGGATGATTTGAGAAATGGGGCTAATACCTCTGCACTCTGCAACAAAGAGGTTGGTTTGGTTCCTCCCTCTGAGAAGCTGCCTCAGGTTTCTGCAACTGCAACAATTGAACATGCTACTGCTCCTGCTGCAAAAGCACAAGTTGTGGGATGGCCACCGATTCGGTCTTTTCGGAAGAACAGAATGGCCTATAATTTGGCAAAAAGCAACACTGAAGCTGAGGAGAAATCAAGAGTCAGCATGGATGGTGCACCTTATCTCAGAAAGGTTGATCTGAAAACCCACTGCAACTATATTGAACTTTCTTCTGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATGCAGTGCACGTGGAATTTCTGGTGGGAAAGAGGGATTGAGTGTGAGAGCTTTCAAGGATCTTGTTGATGGGTCTGAATATGTTCTTACTTATGAAGATAAAGATGGAGATTGGATGCTAATGGGTGATGTGCCTTGGGAGAGGACACCAACCGGTAAACATTCATTGCTTATCGATCGGTGTTCTTCTGCAAACCGTGCTGATTCGTTGTCCCTCCATATACTCCAAGGGCAATGGAAAAATGTAGGAGCCAATATTAATACAGAAGATTCTGCTCTACTATTTGGTCATTCGCTGAAGCATAATATAAAGAAGGATTAG 1020 0.4431 MSTPFEHDYIGLAETPYMEKSCDKISSSVSSNLSSEDENSSSLNFKETELRLGLPGCEFSENKPGAAGISLFGKDLQSSGYSASSIPSKNLKRGFSDAISSSSSSSGKWIFSGSDATGDDLRNGANTSALCNKEVGLVPPSEKLPQVSATATIEHATAPAAKAQVVGWPPIRSFRKNRMAYNLAKSNTEAEEKSRVSMDGAPYLRKVDLKTHCNYIELSSALEKMFSCFTIGQCSARGISGGKEGLSVRAFKDLVDGSEYVLTYEDKDGDWMLMGDVPWERTPTGKHSLLIDRCSSANRADSLSLHILQGQWKNVGANINTEDSALLFGHSLKHNIKKD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02867 339 SUPERFAMILY CAD & PB1 domains 186 280 - -
Vimu11g02867 339 Gene3D - 188 303 - -
Vimu11g02867 339 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 294 IPR003311 GO:0005634|GO:0006355
Vimu11g02867 339 ProSiteProfiles PB1 domain profile. 191 310 IPR000270 GO:0005515
Vimu11g02867 339 Pfam AUX/IAA family 47 280 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02867 Vimu-Chr11 48578527 48580452 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu11g02867 AUX_IAA 3.9e-60 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02867 K14484 - gmx:100795203 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02867 11 48578527 48580452 Vimu11g02867 11 48578527 48580452 ECH