Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02863 ATGACTAAGAACGGAGAGCAACTAGTTATACACCTGTCATATGAAATGGGGAGAAAGGGTATGTTGGTTGAAATGTTACTGTTGCTTCTTCCTCTTCTTAATTCATCATCCGTGAAAAATCTTCTTCGACCTTTCTCAAAAGATAAATCATCAAGTTCATCCGAGGATGGCACAGCATGTCCCATTTGCCTGGCCACTCCAACCATTCCTTATGTTGCTCTACCTTGTCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCATTTAGGTGTTCCAGGTGCAGTGAGCCAGTTGTTGCTATGCAACGGCATAGTGGTTTCCCTACGGAATGA 351 0.4359 MTKNGEQLVIHLSYEMGRKGMLVEMLLLLLPLLNSSSVKNLLRPFSKDKSSSSSEDGTACPICLATPTIPYVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHSGFPTE 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02863 116 PANTHER PEROXISOME BIOGENESIS FACTOR 2 23 112 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Vimu11g02863 116 SMART ring_2 60 100 IPR001841 -
Vimu11g02863 116 Pfam Zinc finger, C3HC4 type (RING finger) 60 100 IPR018957 GO:0046872
Vimu11g02863 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 112 IPR013083 -
Vimu11g02863 116 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Vimu11g02863 116 ProSiteProfiles Zinc finger RING-type profile. 60 101 IPR001841 -
Vimu11g02863 116 SUPERFAMILY RING/U-box 54 107 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02863 K06664 - gmx:100805856 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02863 11 48560571 48562911 Vimu11g02863 11 48560571 48562911 ECH