Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02857 ATGGAGAAGATGAAAATAGAAGAGGTTCAGTCTACCACGAAGAAACAGCGTGTTGCTACTCATACTCACATCAAAGGCCTAGGGCTCGAGCCGACTGGAAAAGCATCGCGTTTTGCCGCTGGCTTCGTCGGCCAAGTTGAAGCCAGAGAAGCTTCCGGTCTCGTGGTCGACATGATTCGCCAGAAGAAGATGGCCGGCCGTGCACTCCTTCTCGCCGGACCACCTGGAACCGGAAAGACTGCACTGGCACTTGGGATAAGCCAAGAGCTTGGCACCAAGGTGCCATTCTGTCCAATGGTTGGCTCTGAAGTGTACTCCTCAGAAGTGAAGAAGACTGAGGTTCTCATGGAAAATTTTCGACGGGCCATTGGTCTGCGTATAAAGGAAAACAAGGAAGTGTATGAAGGAGAGGTAACCGAACTCACTCCCGAAGAAACTGAGAGTGTATCAGGTGGTTATGGTAAAAGTATTAGCCATGTGATAATTGGATTGAAGACAGTGAAAGGAACCAAGCAACTCAAGTTGGATCCTACCATATATGATGCCTTGATTAAGGAAAAGGTAGCCGTTGGGGATGTTATATACATTGAGGCAAATAGTGGCGCTGTAAAAAGGGTGGGTCGAAGTGATGCTTTTGCTACAGAGTTTGACCTTGAGGCAGAAGAGTATGTTCCACTTCCCAAGGGAGAGGTGCACAAGAAAAAGGAGATTGTTCAGGATGTAACCTTGCATGATCTGGATGCTGCCAATGCACGACCTCAAGGAGGACAAGATATTCTGTCTCTTATGGGTCAGATGATGAAACCCAGGAAAACAGAAATCACTGACAAGTTGAGACAAGAAATTAACAAGGTTGTCAATCGATATATTGATGAAGGGGTGGCAGAGCTTGTTCCTGGAGTTCTATTTATCGATGAGGTTCATATGTTAGACATGGAATGTTTTTCGTATTTGAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATATTTGCTACTAATAGAGGAATATGTAATGTAAGAGGGACTGATATGAGCAGTCCTCACGGCATACCTGTTGACCTACTGGATCGGTTGGTGATCATTCGAACACAAATCTATGGTCCTGCTGAAATGATACAGGTAATTCTAGCTATCCGTGCTCAAGTGGAGGAACTGGTGGTGGATGACGAGAGTTTAGCTTTCCTTGGGGAAATTGGACAACAAACATCTTTAAGGCATGCAGTTCAGCTGTTATCACCTGCCAGCATTGTAGCAAAAATGAATGGCAGAGACAATATATGCAAGGCGGATCTTGAAGAGGTTTGTTCGCTATATTTGGATGCCAAATCATCTGCCAGATTACTTCAAGAGCAGCAGGAGAAATACATTTCACAATTGGTTCATAGAATTCATCTGGGTATTATTGATGGTAGCAGAAACCTGAGACAAGAAAACGAGTCACTGCATTAG 1455 0.446 MEKMKIEEVQSTTKKQRVATHTHIKGLGLEPTGKASRFAAGFVGQVEAREASGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGISQELGTKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELTPEETESVSGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRGTDMSSPHGIPVDLLDRLVIIRTQIYGPAEMIQVILAIRAQVEELVVDDESLAFLGEIGQQTSLRHAVQLLSPASIVAKMNGRDNICKADLEEVCSLYLDAKSSARLLQEQQEKYISQLVHRIHLGIIDGSRNLRQENESLH 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02857 484 SMART AAA_5 65 372 IPR003593 GO:0016887
Vimu11g02857 484 Gene3D - 13 365 IPR027417 -
Vimu11g02857 484 Pfam TIP49 AAA-lid domain 377 442 IPR041048 -
Vimu11g02857 484 Gene3D - 122 247 IPR042487 -
Vimu11g02857 484 Pfam TIP49 P-loop domain 17 368 IPR010339 GO:0005524
Vimu11g02857 484 PANTHER RUVB-RELATED REPTIN AND PONTIN 1 459 IPR027238 GO:0008094
Vimu11g02857 484 FunFam RuvB-like helicase 122 247 - -
Vimu11g02857 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 440 IPR027417 -
Vimu11g02857 484 FunFam RuvB-like helicase 370 460 - -
Vimu11g02857 484 Gene3D - 368 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02857 Vimu-Chr11 48510721 48513898 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02857 K04499 - gmx:100809596 863.218