Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02854 ATGCGGGGAAGGCAACGGGTAGCATCCAAGGATCACATACTTGGCCAGGATAAGGATGAAAATTTAGGTCTTGTAGTAAGTGTATGTTTAGGAGGTGCTTTTGTTGGATCTCTGTTCAGTGGATGGATGGCAGATGGTGTTGGGCGTAAAAGAAGTTTCCAGTTGTGTGCTTTACCAATGATAATTGGGGCTGGGATGAGTGCAACAGCAAAAACTCTGTGGGGCATGCTTCTGGGAAGGTTATTTGTTGGTACTGGAATGGGACTTGGTCCACCTGTTGTAGCTCTTTATGTGGCTGAGGTCTCACCTCCAGCTGTTCGAGGTGCTTATGGAGCCTTAACCCAAATTGCAACATGTCTTGGACTCATGGGCTCTTTCTTTATTGGAATCCCATCAAAGGAAATAGTTGGTTGGTATGGAAAGCTATGTAGGCTTGGTGATATTTGTGAAGATATGTGGCGAATTTGTTTCTGGGTATCTGTCGTCCCTTCTGCAATGCTTGCCCTTTTTATGGAGATCTGTGCAGAGAGTCCTCATTGGCTTTTCAAGATAGGAAGAACCACTGAAGCTGAAGCTGAGTTTGAGAAGCTGTTGGGAGGAGTACATGTGAAATCTGCAATGGTTGAACTGTCAAAGGCTGACAAAGGTGATGCATCTGATACACAGCTATCCGGCATAAATGCTGTTTTTTACTTCTCTTCAACTGTCTTTGAAAGTTTTGGTGTGCCATCTGATATTGCAAACGCATGTGTAGGAATCTGCAATTTAGTGGGGTCTGTTATTGCAATGATTCTGATGGATAAACTTGGAAGGAAATTGCTTCTCCTGGGTAGCTTTCTGGGCATGGCGTTAACAATGGGTCTACAAGCCATTGCTGCAAGTTCTTTTGCATCAGGATTTGGAGCAATGTATCTGTCTGTCGGTGGCATGTTACTTGCATGTTTCATTGTGTATGTTGCTAAATGTGAAATGGACAACACAGCTGGTCCAGTTCCTTGTCTTGTCATGTCTGAAATGCTACCCGGAAATATTAGAGCAAAGGCAATGGCCATTTGCCTGGCTGTGCATTGGATGATAAACTTCTTCGTGGGTCTATTTTTCTTGCGCTTGCTGGAGCTAATTGGGGCTCAACTCCTGTATACTATTTTTGGTTCATTTTGTTTGGTAGCAGTGGTTTTTGTGAAGAAATATATTCTGGAAACAAAAGGGAAGTCACTTCAGGAAATTGAAATTGCACTTCTTGCACAAGAGGCAAGCTAA 1260 0.4333 MRGRQRVASKDHILGQDKDENLGLVVSVCLGGAFVGSLFSGWMADGVGRKRSFQLCALPMIIGAGMSATAKTLWGMLLGRLFVGTGMGLGPPVVALYVAEVSPPAVRGAYGALTQIATCLGLMGSFFIGIPSKEIVGWYGKLCRLGDICEDMWRICFWVSVVPSAMLALFMEICAESPHWLFKIGRTTEAEAEFEKLLGGVHVKSAMVELSKADKGDASDTQLSGINAVFYFSSTVFESFGVPSDIANACVGICNLVGSVIAMILMDKLGRKLLLLGSFLGMALTMGLQAIAASSFASGFGAMYLSVGGMLLACFIVYVAKCEMDNTAGPVPCLVMSEMLPGNIRAKAMAICLAVHWMINFFVGLFFLRLLELIGAQLLYTIFGSFCLVAVVFVKKYILETKGKSLQEIEIALLAQEAS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02854 419 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 402 IPR020846 GO:0022857
Vimu11g02854 419 ProSitePatterns Sugar transport proteins signature 1. 40 57 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu11g02854 419 Pfam Sugar (and other) transporter 221 411 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu11g02854 419 Pfam Sugar (and other) transporter 20 212 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu11g02854 419 SUPERFAMILY MFS general substrate transporter 21 410 IPR036259 -
Vimu11g02854 419 ProSitePatterns Sugar transport proteins signature 1. 262 278 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu11g02854 419 PRINTS Sugar transporter signature 77 96 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu11g02854 419 PRINTS Sugar transporter signature 221 231 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu11g02854 419 PRINTS Sugar transporter signature 337 349 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu11g02854 419 Gene3D MFS general substrate transporter like domains 221 418 IPR036259 -
Vimu11g02854 419 Gene3D MFS general substrate transporter like domains 8 220 IPR036259 -
Vimu11g02854 419 PANTHER SOLUTE CARRIER FAMILY 2 23 217 IPR045263 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02854 Vimu-Chr11 48488511 48495708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02854 23 358 Organic Solute Cotransporters AT1G67300 58.127 1.11e-132 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02854 - - gmx:100811182 612.068