Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02850 ATGGCTTCTCTTGCAACCTTAGCTGCTGTTCAACCAGCTGCGATCAATGGTCTTGCTGGAAGCTCCCTCACTGGAACTAAGCTCTCTTTCAAGCCCTCTCGTCAGAGTCTCAAATCCAAGAACTTCAGGAGTGGTGCTGTGGTAGCAAAGTATGGTGACAAGAGTGTGTACTTTGATTTGGAGGATTTGGGTAACACCACAGGGCAGTGGGACTTGTATGGCTCAGATGCACCTTCACCCTACAACCCTCTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCATTCACAAAGAGAGGATTGCTACTCAAGTTTCTGATATTGGGAGGAGGATCCACCTTGGCATACTTGAGTGCAACAGCCTCAGGTGATATTCTACCAATCAAGAAGGGTCCACAACTTCCACCAAAGCTTGGCCCTCGTGGCAAGCTCTAA 435 0.4828 MASLATLAAVQPAAINGLAGSSLTGTKLSFKPSRQSLKSKNFRSGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYLSATASGDILPIKKGPQLPPKLGPRGKL 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02850 144 Gene3D - 98 120 - -
Vimu11g02850 144 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-2, CHLOROPLASTIC 1 144 IPR004928 GO:0009522|GO:0009538|GO:0015979
Vimu11g02850 144 Pfam Photosystem I reaction centre subunit VI 7 144 IPR004928 GO:0009522|GO:0009538|GO:0015979
Vimu11g02850 144 FunFam Photosystem I reaction center subunit VI 98 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02850 Vimu-Chr11 48460904 48461978 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02850 K02695 - gmx:100499832 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02850 11 48460904 48461978 Vimu11g02850 11 48460904 48461978 ECH