Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02818 ATGGGCGCTTCTCTGCCGAACAAGGAGGCCAACCTCTTCAAGCTCATCGTCAAATCGTATGAAACCAAACAGTATAAAAAGGGCCTCAAAGCTGCTGATACCATTTTGAAAAAATTTCCAGACCATGGAGAAACTTTATCGATGAAGGGTTTGACACTAAATTGCATGGATCGTAAGTCTGAAGCATATGAACTTGTTCGTCAAGGATTAAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGATCAGACAGAGAATACAGGGAAGCGATCAAGTGCTATCGAAATGCACTGAAAATAGATCCTGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAGGCACAAATGCGAGATTTATCAGGCTTTGTTGAGACAAGACAACAACTTTTGACTTTGAAGCCAAATCATCGCATGAATTGGATTGGATTTTCCGTAGCCCATCATTTGAACTCCAATGCATCCAAAGCAGTTGAAATTTTGGAAGCGTATGAAGGGACTTTGGAAGAGGATTATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTGTACAAGATTGGCTATATAGTGAACTGGCCACCTGATTTGATCTCGTTGTTAGAGGAATGTGGGTTTCTCGAGAGAGCTCTTGACGAGTTGCACAAAAAAGAATTTAAAATTGTTGATAAGCTTGCATACAAAGAACAGGAGGTGTCACTTTTAGTAAAGCTTGGTCACTTACAAGAAGGCGAAGCTTTGTACCAGGCATTACTTTCCATGAATCCTGATAATTATAGATACTATGAAGGGCTTCAAAAGTGTGTTGGACTTTATTTAGAAGATGGACAGTACTCGCCTGATCAAATAGACCAGTTAGATTCCTTGTACAAAACACTTGTACAACAATACAAGTGGTCTTCTGCTGTTAAGAGAATACCGCTAGATTTTCTACAAGGTGACAAATTTCGAGAAGCAGCAGACAATTATATTAGGCCTCTCTTAACCAAGGGCGTTCCCTCTCTGTTCTCTGATCTATCATCTTTGTACAATCACCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTTGAGTTAGAGCAGTCAATTAGGATGACAGGCCAATATCCTGGAGGGACGAACAAAGAACCCCCTTCAACTCTTATGTGGACTTTGTTTTTATTGGCTCAGCATTATGACAGGCGGGGTCAATTTGAAATTGCTCTTTCTAAAATTGATGAAGCTATAGAACATACACCCACAGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAGTGTGTTAAACGGATGCTGCAGGCTGATCAGGTGTCTTTGGCTGAAAAAACTGCTGTATTGTTCACAAAGGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGGTATGAGCTTGCATCGGGTGAAAGTTATTTCCGCCAGGGTGATCTTGGACGGGCACTCAAAAAATTTTTAGCCGTGGAGAAGCATTATGCTGATATTACGGAGGACCAATTTGATTTTCATTCTTACTGCTTACGGAAAATGACATTGCGATCTTACGTGGAAATGCTTAAATTTCAAGACCAATTGCATTCACATTCATATTTTCACAAAGCAGCCGCTGGGGCTATCAGATGCTATATTAAGTTGCATGATTCTCCCCCAAAGTCTACAGCAGAGGAAGATGATGACATGGCGAAGTTACTTCCTTCTCAGAAGAAGAAAATGAGGCAAAAGCAGAGAAAGGCAGAAGCAAGAGCCAAAAAAGAGGCAGAAGAAAAGAATGAAGAGTTGAGTGCAAGTGGGATATCGAAGTCTGGGAAGCGGCATGTAAAACCTGTTGATCCTGATCCAAACGGGGAGAAGTTGTTAAAGGTTGAAGATCCACTGTCAGAAGCTACTAAATACTTGAAGTTGCTGCAGAAGAATTCCCCTGATTCATTGGAGACACACTTGCTCTCTTTTGAATTATATACAAGGAAGCAAAAGACTTTGCTTGCCTTTCAGGCTGTGAAGCAGTTACTGAGATTGGACCCTGAACACCCTGATTCTCATCGTTGCCTGATTAAATTCTTCCATAAAGTGGGATCCATGAATGCTCCTGTGACTGACAATGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGACCAAATATTAGCCAGGTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTGTCCTTGACAAACATAAAGATTCTTTGATGCATAGAGCAGCTTTTGTAGAAATCTTGCACATTTTGGATTCAAACAGAAAATCCGAGGCTGTTAAGTTCATTGAAGAAACAACAAATAACACTGTGCCCAGAAATGGTGCACTTGGACCAATCAGGGAATGGAAACTTAAAGACTGTATTGCAGTTCACAATCTTCTAGAAACAGTTCTTACTGATCAGGATGCTGCATTGAGATGGAAGGTGCGATGTGCGGATTACTTTCCATATTCTACGTACTTTGAGGGAAAACACAGCTCTGCCTCTCCCAACTCCGCCTTCAACCAGTTACGTAAGAACTCTGAAAATGAGAGTGTTAACCACATCACATCAAACGGGAAACTAGAGGCATTTAAAGATCTCACTATCTGA 2712 0.4115 MGASLPNKEANLFKLIVKSYETKQYKKGLKAADTILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKPNHRMNWIGFSVAHHLNSNASKAVEILEAYEGTLEEDYPPENERCEHGEMLLYKIGYIVNWPPDLISLLEECGFLERALDELHKKEFKIVDKLAYKEQEVSLLVKLGHLQEGEALYQALLSMNPDNYRYYEGLQKCVGLYLEDGQYSPDQIDQLDSLYKTLVQQYKWSSAVKRIPLDFLQGDKFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELEQSIRMTGQYPGGTNKEPPSTLMWTLFLLAQHYDRRGQFEIALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRSYVEMLKFQDQLHSHSYFHKAAAGAIRCYIKLHDSPPKSTAEEDDDMAKLLPSQKKKMRQKQRKAEARAKKEAEEKNEELSASGISKSGKRHVKPVDPDPNGEKLLKVEDPLSEATKYLKLLQKNSPDSLETHLLSFELYTRKQKTLLAFQAVKQLLRLDPEHPDSHRCLIKFFHKVGSMNAPVTDNEKLIWSVLEAERPNISQVHEKSLFEANNSVLDKHKDSLMHRAAFVEILHILDSNRKSEAVKFIEETTNNTVPRNGALGPIREWKLKDCIAVHNLLETVLTDQDAALRWKVRCADYFPYSTYFEGKHSSASPNSAFNQLRKNSENESVNHITSNGKLEAFKDLTI 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02818 903 Gene3D - 2 514 - -
Vimu11g02818 903 MobiDBLite consensus disorder prediction 642 657 - -
Vimu11g02818 903 Coils Coil 206 226 - -
Vimu11g02818 903 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515
Vimu11g02818 903 Gene3D - 516 736 - -
Vimu11g02818 903 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Vimu11g02818 903 Pfam TPR repeat 84 123 - -
Vimu11g02818 903 SMART tpr_5 77 110 IPR019734 GO:0005515
Vimu11g02818 903 SMART tpr_5 43 76 IPR019734 GO:0005515
Vimu11g02818 903 SMART tpr_5 391 424 IPR019734 GO:0005515
Vimu11g02818 903 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 516 736 - -
Vimu11g02818 903 Pfam N-terminal acetyltransferase A, auxiliary subunit 207 707 IPR021183 -
Vimu11g02818 903 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 514 - -
Vimu11g02818 903 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 837 - -
Vimu11g02818 903 SUPERFAMILY TPR-like 392 718 IPR011990 GO:0005515
Vimu11g02818 903 PIRSF NAT_A 1 829 IPR021183 -
Vimu11g02818 903 MobiDBLite consensus disorder prediction 603 657 - -
Vimu11g02818 903 Coils Coil 607 635 - -
Vimu11g02818 903 MobiDBLite consensus disorder prediction 617 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02818 Vimu-Chr11 48255382 48267829 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02818 K20792 - gmx:100820094 1635.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02818 11 48255382 48267829 Vimu11g02818 11 48255382 48267829 ECH