Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02813 ATGCCTTCACTCTCCGAAGCCTTTCGAGCTCATCCTGTCTACCTTCACCACAAGCACTCTGATTTCAACTCTCTGCAACAGAAGCTCCCCGATTCTTACGCATGGACACAACCAGATTCTCATGCTTACGCTGATGCAAATTCTGATAACAAGACTGTCCCCGTTATCGATTTGAAAGACCCTAATGCAGCCAACCTCATAGGACATGCATGCAGAAGATGGGGCGTCTTCCAAGTGGTCAACCATGGCGTCCCATTGACCCTCTTCACTGACATTCAGAGAGCTTGCCTTGCCTTGTTCTCTCTTCCTCTTCACCAGAAGCTCAAAGCTGCTCGCTCCCCCGACGGCGTCTCCGGCTACGGCCGCGCTCCCATCTCCTCCTTCTTCCCCAAACTCATGTGGTCTGAGTGCTTCACCATTCTCGATTCCCCTCACCACCTTTTTCTCCAACTCTGGCCCCAAGACCATGCTAAATACTCTGAGATTGTGAAGGAATATGAAGCCGCCATGAAAGAATTAGCGGCGAAGCTAATGTGCCTTGTGTTCGCTTCCCTCGGTATTTCGAAGGAGGACGTTAAATGGGCCGGGCCGAGAGGTGAATTCGACGGGGCTTGTGCGGCCTTACATTGGAATTCTTACCCGAGTTGCCCGGATCCTGATCGGGCCATGGGTCTGGCGGCCCACACGGACTCCACACTGCTCACGATTCTGCAGCAGAACAACGTGAGTGGGCTTCAGGTTCTGAAGGAGGGTGAAGGATGGGTGGCGGTTCCGCCGCTTGCCGGAGGGCTGGTGGTCAACATTGGCGATCTGCTCCACATTTTGTCGAACGGGTTGTACCCGAGTGTGCTGCACCGGGTGCGGGTGAACCGGAGCTGGCAAAGGTTCTCGGTTGCTTATCTATATGGGCCCCCAACAAACGTGGAGGTTAGTCCAAATGAAAAATTGGTAGGCCCAGGTAGGCCCTGTCTTTATCGATCGGTGAGTTGGAAGGAGTACCTTGGTATCAAAGCAAAGCATTTCAATAAGGCTCTATCTGCTGTTAGAATTTCGTCCGCCATTAACGGTTTATTTGATGTAAAGGAGGTTCAGAACGACTTTCACGTGGGCTAG 1113 0.5247 MPSLSEAFRAHPVYLHHKHSDFNSLQQKLPDSYAWTQPDSHAYADANSDNKTVPVIDLKDPNAANLIGHACRRWGVFQVVNHGVPLTLFTDIQRACLALFSLPLHQKLKAARSPDGVSGYGRAPISSFFPKLMWSECFTILDSPHHLFLQLWPQDHAKYSEIVKEYEAAMKELAAKLMCLVFASLGISKEDVKWAGPRGEFDGACAALHWNSYPSCPDPDRAMGLAAHTDSTLLTILQQNNVSGLQVLKEGEGWVAVPPLAGGLVVNIGDLLHILSNGLYPSVLHRVRVNRSWQRFSVAYLYGPPTNVEVSPNEKLVGPGRPCLYRSVSWKEYLGIKAKHFNKALSAVRISSAINGLFDVKEVQNDFHVG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02813 370 PRINTS Isopenicillin N synthase signature 67 84 - -
Vimu11g02813 370 PRINTS Isopenicillin N synthase signature 264 290 - -
Vimu11g02813 370 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 143 IPR026992 -
Vimu11g02813 370 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 203 304 IPR005123 -
Vimu11g02813 370 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 53 334 - -
Vimu11g02813 370 Gene3D - 19 335 IPR027443 -
Vimu11g02813 370 Pfam 2OG-Fe(II) oxygenase superfamily 209 304 IPR044861 -
Vimu11g02813 370 Coils Coil 156 176 - -
Vimu11g02813 370 FunFam Gibberellin 3-beta-dioxygenase 1 16 336 - -
Vimu11g02813 370 SUPERFAMILY Clavaminate synthase-like 25 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02813 Vimu-Chr11 48207506 48208720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02813 53 348 Glycosyltransferase AT5G59530 29.393 1.72e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02813 K04124 - gmx:100794180 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02813 11 48207506 48208720 Vimu11g02813 11 48207506 48208720 ECH