Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02803 ATGGCAACCACATTCACGTTTATCCGACCCCCAATCATCCGGGCTTCTGCGGGCTCGCCGGCAAAGCCCGATCCCAACAACAGGAAGCCCGTTTCTTCCAATTGGTGGGCCCCTTTGTTCGGTTGGCCCGCGGAGGCAGACTACATCAGCCCAAATCCGAGCAAAAAACCAGATCTGGAGCGAGAGCTGAACCGGCCCGGTTCAAGGTTCGCTGGGTGCTTCACAGAAGAGAAGGCGAAACAGCTGCGTAAGAAAACAGTAGAAACGTCGACGTTTCACGACATCATGTACCATTCTGCTATCGCCTCCAGACTCGCCTCCGATATTTCGAAAGGGTACCGTTACATTTTCTCTATCCAAACACGTTCTAACCTACGCCGTGTGCGTAAACCAAATCCCGAAACACGTAAGGAAAGGCGCGAAGAAGAGGATTCGGTTAAAACCTTCACCTTTCCAATTGTGCCTTCGATGATGGGATCCGGGTCGGGTTCTCTGGTGTGGTTCAGGAAGGGCATTCGGATCCACGACAACCCGGCTCTCGAGTTCGCGTCCCGAAGTGCCTCTCATCTCTACCCTGTCTTCGTGATTGACCCGCGTTATATGAAACCCGACCCGAATGCTTTCTCACCTGGGTCATCGCGCGCGGGTCTGAACCGCATCAAGTTCTTGCTGGAGAGTCTCGTGGACCTGGACCTCAACCTCAAGAACCTTGGCTCGCGACTTTTGATTCTCAAGGGTGACCCAGCTGAAGTCGTCATTCATTGCTTGAAGGAGGCATGTTGGAATGTCAGCAAGCTGTGCTTTGAGTACGACACTGAACCGTATTATCAGGCTCTGGATGTTAAAGTTAAGAACTTTGCACTCTCTGCTGGAATTGAGGTTTTCTCTCCTGTGAGTCACACACTCTTCAACCCCACGGATATTATACACAAGAACGGAGGGAAGCCACCCCTTAGTTATCAATCGTTTGTCAAGCTTGCCGGGGAGCCACCCTCTCCTCTCACAACCGTGTACTCTTCACTTCCTCCAGTTGGCCATCTTGGAAGTTGTGATATTTCTGAAGTTCCTACTATCACAGATCTTGGATATGGAGATGCTGAACAGGATGAGTTCTCTCCTTTCAAAGGGGGTGAGTCAGAAGCATTGAAGAGGTTGGATGAATGCATGAAAGACAAGAAGTGGGTGGCAAACTTTGAGAAACCAAAGGGCAATCCATCTGCATTTCTGAAGCCGGCAACAACTGTTTTATCACCGTACCTTAAATTTGGTTGTTTATCTTCAAGATATTTCTACCAGCGAATTCAGGACATATATAGAAGTATGCCAAAGCATACATCACCACCTGTTTCTCTTACCGGACAGTTGTTGTGGCGAGAGTTCTTTTACACGGCTGCTTTTGGGACTCCAAATTTTGATAGAATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGATAAACTGCTGGAGGCTTGGAGGGAGGCTAGGACGGGATTTCCTTGGATTGATGCTATCATGATCCAGCTACGCAGATGGGGTTGGATGCATCATTTGGCACGACATTCTGTCGCATGTTTTCTAACTCGAGGCGATCTGTTTGTTCACTGGGAAAAAGGACGGGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCAATTAATAACGGAAATTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTACAATCGTATTTATTCCCCAACCACATTCGGTAAGAAGTATGACCCTAATGGCGACTATATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAAGGAGTACATTTATGAACCTTGGACTGCTCCTAAAACGAGTAAAGAGTGCCGAAGGAAAATGGGGGAAGCATATGCATTGAATAAAGAATTGAATGGGTTGGTTGGTGAAGATGATCTGAAAAACTTGAGGAGGAAATTAGATGAGAGTGAAAGGCAAGAGCCTGAAGGCAAAAGATATAAGCAAAAACTGATTGGCTGA 2016 0.4717 MATTFTFIRPPIIRASAGSPAKPDPNNRKPVSSNWWAPLFGWPAEADYISPNPSKKPDLERELNRPGSRFAGCFTEEKAKQLRKKTVETSTFHDIMYHSAIASRLASDISKGYRYIFSIQTRSNLRRVRKPNPETRKERREEEDSVKTFTFPIVPSMMGSGSGSLVWFRKGIRIHDNPALEFASRSASHLYPVFVIDPRYMKPDPNAFSPGSSRAGLNRIKFLLESLVDLDLNLKNLGSRLLILKGDPAEVVIHCLKEACWNVSKLCFEYDTEPYYQALDVKVKNFALSAGIEVFSPVSHTLFNPTDIIHKNGGKPPLSYQSFVKLAGEPPSPLTTVYSSLPPVGHLGSCDISEVPTITDLGYGDAEQDEFSPFKGGESEALKRLDECMKDKKWVANFEKPKGNPSAFLKPATTVLSPYLKFGCLSSRYFYQRIQDIYRSMPKHTSPPVSLTGQLLWREFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMIQLRRWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPKEYIYEPWTAPKTSKECRRKMGEAYALNKELNGLVGEDDLKNLRRKLDESERQEPEGKRYKQKLIG 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02803 671 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 162 302 IPR006050 -
Vimu11g02803 671 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 369 619 IPR036134 -
Vimu11g02803 671 Gene3D - 300 467 - -
Vimu11g02803 671 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 163 347 IPR036155 -
Vimu11g02803 671 PANTHER CRYPTOCHROME 164 630 IPR002081 -
Vimu11g02803 671 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 469 670 - -
Vimu11g02803 671 Gene3D HUPs 160 299 IPR014729 -
Vimu11g02803 671 MobiDBLite consensus disorder prediction 651 671 - -
Vimu11g02803 671 Pfam DNA photolyase 164 326 IPR006050 -
Vimu11g02803 671 Pfam FAD binding domain of DNA photolyase 453 630 IPR005101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02803 Vimu-Chr11 48133031 48139272 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02803 K02295 - gmx:100780347 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02803 11 48133031 48139272 Vimu11g02803 11 48133031 48139272 ECH