Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02797 ATGTTGGAAGTAAATATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTGAACTTTCAGAGGAGAGATTCATGCCAGCGATGTGGGGACTCAAAATATGGAGATAGAATTGATTTTGGTGCGTTTGGAGGAAGAGGAGGGTCTTCATTTGGGTTAACTGGGTCAGATGTTCGCCCTGGTGACTGGTACTGTGCTGCTGCTAACTGTGGGGCTCACAACTTTGCTAGCCGCTCAAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGACTTGGCTGGAGGCTACAACAGTGACATCTTGCGCTCAAGAGCTTTTGGTGGCAGTGGAAGACCTGGGTGGAAATCTGGTGATTGGATATGCAGCAGGTCAGTCATTCATTCATTCATTCATTGA 399 0.4887 MLEVNMSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYGDRIDFGAFGGRGGSSFGLTGSDVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDDLAGGYNSDILRSRAFGGSGRPGWKSGDWICSRSVIHSFIH 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02797 132 FunFam Ran-binding zinc finger protein 55 92 - -
Vimu11g02797 132 ProSitePatterns Zinc finger RanBP2-type signature. 12 31 IPR001876 -
Vimu11g02797 132 SMART zf_4 63 89 IPR001876 -
Vimu11g02797 132 SMART zf_4 10 34 IPR001876 -
Vimu11g02797 132 Pfam Zn-finger in Ran binding protein and others 8 33 IPR001876 -
Vimu11g02797 132 Pfam Zn-finger in Ran binding protein and others 61 88 IPR001876 -
Vimu11g02797 132 SUPERFAMILY Ran binding protein zinc finger-like 56 91 IPR036443 -
Vimu11g02797 132 SUPERFAMILY Ran binding protein zinc finger-like 6 38 IPR036443 -
Vimu11g02797 132 ProSiteProfiles Zinc finger RanBP2 type profile. 61 92 IPR001876 -
Vimu11g02797 132 ProSiteProfiles Zinc finger RanBP2 type profile. 8 37 IPR001876 -
Vimu11g02797 132 Gene3D - 56 92 - -
Vimu11g02797 132 Gene3D - 3 37 - -
Vimu11g02797 132 PANTHER ZINC FINGER PROTEIN 58 124 - -
Vimu11g02797 132 ProSitePatterns Zinc finger RanBP2-type signature. 65 86 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02797 Vimu-Chr11 48100309 48102479 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02797 - - gmx:100499847 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02797 11 48100309 48102479 Vimu11g02797 11 48100309 48102479 ECH