Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02787 ATGTCGGACATGAATCATGATTCATGTGAGAGGAAGATTAAGATGGATCTATACATTGTCATCACCGGTTCTGTGAAATCAAATGTTCGTTTTCTCTGTAAAACCTTTTTTCAGCATCCTCCTCGTCTCGCTCTCAGTCTTCTTCTTTCTCGTACTGCTATCGCCTCCTTTGAAATTGGCAACTGGGCATCTTCAATTGTGGACTTGGTATCGTGGGTAGTGACATTTTTGCGTATTGTTGCTGATCTGTGGTGGATATATGGAATGTTCGGAGACTCGTGGAATGGAGACCTTGCAATTGGTGGCTACAAGGACATCAAGCAGCTAGAACTTTCAGTAGCAATTGAAATTCCGGAAGTTGCAGTGAGTAGATCTACTTCTGGCATAGGATTGGCTTTTCAATGTTATTTGGAGTTGGATTTGCAACGGATAGGGTTCATTGTTGAGGCTCTACCACTAGAAACCAACGGATATATCAGAGTGGATTGCTATGGGGGCCTCAATCAGATGCGAAGAGATTTCTGTGATGGTGTGGGCATTGCTCGTTTGTTAAATGCAACTCTCGTCTTACCAAAGTTTGAAGTGGCGTCATATTGGAATGAAACAAGGCAATTTACCTTTTTCCATTTCTCTGGAATACCTGGCAAATCTTTACTCAAAATTGTGTTCATTGACTACTTCATACGGCATATGAATGGCTTTGTCAAAGTTGTGAAAGAGTTACCACCAGAGGTTGCATCTAAAGAACCTGTTCATGTGGACTGTAGCAAACGGAAAGGGCAATTTGATTACGTTGAAAGTGTTCTTCCATCTTTGTTAGAACACAAGTACATTTCAATCACACCAGCAATGTCCCAAAGAAGGGACAGATACCCTTTGTATGCAAAAGCTGCTCTGTGTCAAGCTTGTTACAAAGCATTGCGTCTTTCGAGATCCTTGGAAAGGAAAGCCTCTGAGCTTCTAGATGCAATACCTAAACCCTTTTTGTCACTTCATCTTCGTTTTGAGCCTGATATGGTTGCATACAGCCAGTGCGAGTACTGGGGTCTTTCTCCTGCTTCCATGAAAGCCATAGAGGAAGCACAAGTGGACAGAAAACCATGGACTGGAGACTTAGCTCGCATTTGGAGACTACGTGGAAAATGTCCTCTTACACCTAACGAGACAGCTTTAGTACTTGAATCTCTTTCCATCCCACCAACTACAAATATATACCTAGCAGCTGGAGATGGTTTGATGGAAATTGAAGGATTGACAGAAACCTATGCCAACATATTTACTAAGTCAAGTCTTCTTAGTAGGGAAGACTTCACAAACATGCATGGCAATACAAAAGCTGCTTTGGATTATTATATATCCATTAACAGTGATTCTTACGTAGCTACATATTTTGGGAACATGGACAAGATGGTTGCAGCAATGAGAGCTTTCAAAGGTTTGTATAAGACTCTATTTTTGAGCAGAAGAGGTTTTGCAGAATTAACCTCAAAGGGTCTTACGGGAAAGGAGTTGATGGCAGCACTATGGAAGGTTCACAGAGATGATTTTGCTATGGGAAGAGGCTCTGCTCTGCCAGAGTGTTTTTGCGAATTCAAGTTCTGA 1602 0.417 MSDMNHDSCERKIKMDLYIVITGSVKSNVRFLCKTFFQHPPRLALSLLLSRTAIASFEIGNWASSIVDLVSWVVTFLRIVADLWWIYGMFGDSWNGDLAIGGYKDIKQLELSVAIEIPEVAVSRSTSGIGLAFQCYLELDLQRIGFIVEALPLETNGYIRVDCYGGLNQMRRDFCDGVGIARLLNATLVLPKFEVASYWNETRQFTFFHFSGIPGKSLLKIVFIDYFIRHMNGFVKVVKELPPEVASKEPVHVDCSKRKGQFDYVESVLPSLLEHKYISITPAMSQRRDRYPLYAKAALCQACYKALRLSRSLERKASELLDAIPKPFLSLHLRFEPDMVAYSQCEYWGLSPASMKAIEEAQVDRKPWTGDLARIWRLRGKCPLTPNETALVLESLSIPPTTNIYLAAGDGLMEIEGLTETYANIFTKSSLLSREDFTNMHGNTKAALDYYISINSDSYVATYFGNMDKMVAAMRAFKGLYKTLFLSRRGFAELTSKGLTGKELMAALWKVHRDDFAMGRGSALPECFCEFKF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02787 533 Pfam GDP-fucose protein O-fucosyltransferase 158 477 IPR019378 -
Vimu11g02787 533 PANTHER OS02G0726500 PROTEIN-RELATED 154 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02787 Vimu-Chr11 48058341 48062243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02787 152 503 Miscellaneous Gene Families AT1G22460 32.692 1.33e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02787 - - gmx:100801207 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02787 11 48058341 48062243 Vimu11g02787 11 48058341 48062243 ECH