Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02774 ATGGTTAGTTCGCTCTGTCTTAGTTTAATGGTGACAGTTTTAATGTTTGTACAGTATTCAGAGGCACAAAGAGTGTTCAATGTCGGAGATGGCACGGGCTGGACAACCCCACAAGATTCCTCCACATACCAATCTTGGACAGCACAACATAACGTGGTTGAAGTGCCGGAACAATCCTACACTTCCTGCACTTCGGCTAATTCTATACGTACATATACAACGGGTCCGGTCAACGTTACCCTTGACACAGCCGGTCAACATTACTACATCTGTAGCATCGGTCAGCACTGTACACGTGGACAGAGGTTAGCCGTCAATGTCTCCGGCTCTGGTTTGCCACCTTCCGCCGCCGTTTCACCGGGTGCCAACACCACTCCACCACCACCACCTTCATCTCCGGCAGCCACTTTTTCTCCTGCTTCCGTTGCCTTCTTTCTCTTCTTATCCTCGTTTATTGTAGTGCTTTTCGGACATCATGCTTGA 483 0.4907 MVSSLCLSLMVTVLMFVQYSEAQRVFNVGDGTGWTTPQDSSTYQSWTAQHNVVEVPEQSYTSCTSANSIRTYTTGPVNVTLDTAGQHYYICSIGQHCTRGQRLAVNVSGSGLPPSAAVSPGANTTPPPPPSSPAATFSPASVAFFLFLSSFIVVLFGHHA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02774 160 MobiDBLite consensus disorder prediction 114 133 - -
Vimu11g02774 160 SUPERFAMILY Cupredoxins 25 108 IPR008972 -
Vimu11g02774 160 PANTHER BLUE COPPER PROTEIN 24 122 IPR039391 GO:0009055
Vimu11g02774 160 Pfam Plastocyanin-like domain 46 101 IPR003245 GO:0009055
Vimu11g02774 160 ProSitePatterns Type-1 copper (blue) proteins signature. 85 101 IPR028871 -
Vimu11g02774 160 ProSiteProfiles Phytocyanin domain profile. 1 109 IPR003245 GO:0009055
Vimu11g02774 160 Gene3D - 14 108 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02774 Vimu-Chr11 47980364 47981088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02774 26 128 Miscellaneous Gene Families AT5G20230 32.500 3.47e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02774 - - pvu:PHAVU_010G155900g 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02774 11 47980364 47981088 Vimu11g02774 11 47980364 47981088 ECH