Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02759 ATGCCCCCAAGATCAGGAAAAGGAAAATCCAATAAAGCAAAGGCAGATAAGAAGAAAAAAGAAGAAAAAGCAGCAGCACCTTCTCTTGTTGACATAACTGTGCTGACTCCATATGATGCAGAGATTCTTTTGAAGGGTATCTCTACTGATAAGATTCTTGATGTGAGGAAACTATTGGCTGTGAAGGTGGAAACATGCCATTTCACAAACTATTGTTTATCTCATGAGGGTAAAGGTCATAAATTGAATGACAGAGTGGAAATTGTTAGCCTAAAGCCATGTGTTCTGAGAATGGTTGAAGAGGATTACACAGAGGAGGCCCAAGCAGTTGCGCACGTGCGGAGGGTCTTGGACATTGCCCAAACGGAGTTTATCAAGCCCAGAATCGAGACCCAAGAAAAACGGGAAGGCCCAACATCAGAACAAGACGAGTTTGAGCCCACCCGGGACACCGAATGGGGAATCCAGGGTCGGGTCACCGTCGTCGGAGTCGCCACCGTCGGCGATCTCCGACAATGTGGGGATGAAGGCCATTCACCCGACGCCGAAGCTCTCAGACTTCTACGAGTTCTTCTGGTTGTCTCACCTCTCTCCCCCCATTTTACGTGGGTACCTCTTCCTCCTCACTTTCATTATGAATTGAAGAGATGTGAAGTGAAGGATGAAGATGATAGGCGCAAAGGGGATTACTTTCAGCTTCAGGTTAAAATATGCAATGGGAAGGTAATAGAAGTGGTTGTTTCAGAGAAAGGGTTTTACACTGTGGGGAAGCAGTCTCTGCACAGCCACACCTTGGTTGATCTTCTCCAACAGCTCAGCCGAGCCTTTGCTAATGCATATGAGTCGTTGATGAAAGCCTTTTTGGAACGTAATAAGTTTGGAAATCTTCCATATGGATTCCGAGCAAATACATGGCTTGTCCCTCCATCTGTGGCTGAGTCTCCTTCAAGCTTTCCCGCATTGCCCGCAGAGGATGAAAACTGGGGTGGTAATGGTGGCGGCCAAGGAAGAAATGGCGAATTCGATCTTAGACCGTGGGCAACGGATTTTGCAATATTGGCCTCTCTTCCTTGCAAAACCGAGGAGGAGAGAGTACTCAGGGATAGAAAAGCATTTCTGCTTCACAATCAATTTGTTGATACCTCAATATTTAAGGCTGTTGCGGCTATACAGCAGGTCATAGAATCCAACTCAAACATGAAGAGTGAATTGAATTCTTCTCCGGGTGCTGTTCTGCATGAAGATCGCGTGGGAGACTTATCCATTGTAGTCAAACGTGACATCCAGGATGGAAATAAAAAGCATGATTCTATGCAAGTTGAATCCATCATGCAAAAGGATGATGTTCAGAAGAATTTAATCAAAGGATTGACAGCTGATGAAAGTGTAGTTGTTCATGATACTTCTTCCTTGACTGTCGTTGTTGTACACCACTGTGGATATACTGCAACAGTAAAGGTTGTGGGTAATGTGAACATGAGGAAGCCTAAAGTGCGAGACATTGAGATAGATGATCAGCCAGATGGTGGGGCAAATGCTCTCAACATCAACAGTTTGAGGATGCTGCTTCACAAGTCTGGATCTGATTCATTAGAAGGGAATGTGTCATCCCTATCAATTTTGGATGACGAAGATGCTACTAGAAGCCTTGTTCGAAAGGTTATTCAAGAAGGCATAGAGAAAATAAAGGAGGAGCCAAGTATTTCAAAAAGGTCTATTCGGTGGGAACTTGGTTCCTGTTGGATGCAGCATTTGCAAAAACAGGAAACTTCATCTGATAACAGTTCCAAAAACAAAGAAGATGGGAATGACGTTGAGCAAGCTGTTAAAGGTCTTGGAAAGCAATTTAAATTTTTGAAGAAGAGAGAGAAGAAATCAAATGACGTAGATGGTACAGATTCTCGAGAGCAAAATGACTCTAGCCCTGGAGATGTGAATGACAATGCTGATAAAGTTGAGCCGAACAGTGGTGACTTTAGTAACTCTAGTGAATTAGAGAAACTACTTTCTAACGAAGCATTTTTGCGTCTCAAAGAATCTGGAACTGATCTTCATACCAAGTCAGTGGATGAGCTTATCAACATGGCACACAAGTTTTATGATGAAGTTGCCTTGCCAAAGCTGGCTATGGACTTTGGATCACTTGAACTTTCTCCTGTGGATGGGCGAACACTGACCGATTTTATGCATTTAAGAGGCTTAAAGATGCGATCTTTGGGTCAAGTGGTTAAACTTGCTGAGAATCTTCCTCACATACAATCCCTTTGTATTCATGAGATGATTACTCGAGCTTTCAAGCATCAACTTAAAGCAGTTATTGCCTCTGTTGAAAATGTAGCTGATCTATCTGCAGCCATTGCATCAACACTAAATTTCTTACTTGGTGGAAGTCGAACAGAAGATAATGATCAAAGTTTGAATGATGATCATAGTCTCAGAATTCAGTGGCTACGAATGTTTTTGTCCCAAAGATTTGGGTGGACACTGAATGATGAATTTCAACATTTGAGGAAGTTGTCGATTCTCAGAGGGCTATGTCACAAGGTTGGATTGGAATTATACCCTAGAGATTATGACATGGAGTCTATTAAGCCCTTTGGGAAAAATGATATTATCAGCTTGGTTCCTGTTTGCAAGCATGTAGGGTGCTCCTCAGTAGATGGACGCAATTTGCTGGAGGCTTCAAAAATTGCTCTTGATAAAGGAAAACTTGAGGATGCTGTAAATTATGGAACAAAGGCATTGGCTAAAATGATGGTTGTTTGTGGACCCTATCATCGAAATACTGCGAGTGCATATAGTCTCCTAGCTGTGGTTCTCTACCACACAGGAGATTTTAACCAGGGGAAAGAGATGAAAGAAAGAGAAAAGGGGAAAGCATGTTTAAGACTTTCTGAACCTAAATATAATAACGAATCAACAGAATTTACTGAGGGTCTTGAGAGAGTACTGCATGGCAGTGGACCTGCCACCATTTATCAGCAAAAGGCCTTGGATATAAATGAGAGGGAGCTTGGTCTTGACCACCCTGACACTATGAAAAGCTACGGGGATCTTTCTGTTTTCTATTATCGTTTACAACACATTGAGCTGGCTCTGAAGTATGTTAATCGTGCTCTATTCCTTCTTCACTTTACATGTGGGCTGTCTCATCCAAACACAGCTGCAACATATATAAATGTGGCTATGATGGAAGAGGGCATGGGAAATGTTCATGTGGCACTCAGATACTTGCATGAAGCTCTTAAATGCAACAAAAGATTGTTAGGAGCAGATCATATACAGACTGCCGCTAGCTACCACGCCATAGCTATAGCTCTTTCATTGATGGATGCATTCTCTCTGAGTGTGCAACATGAGCAAACTACACTAAAGATACTTCAAGCAAAGCTTGGATCAGAAGACCTTCGTACACAGGATGCTGCGGCTTGGCTTGAGTATTTTGAATCAAAAGCCATAGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTTAGCGTGTCAGATCTCCTGGATTTTATCAGTCCTGATCCGAAAAGAAATGATGCACAGAGAAAACAGAGGCGTGCAAAGCTGCTCCCAACAAGTGATAACAATCAAGAACATGAAGATGCAGTAGCTGAGGAGAGCATTGTTTTTTATGACTCAAGAGATGCTCCAAACATGGTAGAAGAGAATATAGAAGAAACCAATGACACACGTGATTATCAAATACCAAAAGAAAATAGTGATTTCACTAGTTACAGGCCAGTGACAAGTGAAGTTGTTTATGAGGCATCTTCCGATGAGGGTTGGCAAGAAGCAAATTCAAAAGGGCGATCAGGAAATGCTACTAACCGCAAGTTCGGCCAGAAAAAGCGGCCTCTTCTATCAAAGCTCAGCATCAATGGTTCTAATAATTACATTTACAGGGAAAGCAGTTCTAGGAATGAGATTACTTCACCACCACAAAGAGGAGTTCCTAGAGCAATGTCCGACGTGTCATCTCCGTCTAGACAACCAAAAGCTCGAAACATTGCTTTGAACGAGGATGCTGTTAATTATCCAACAAAAACTTCTGTGTCAAAAATTTCATCTCCAGCATCTCTAAGTTCCTTGGCTTCAAAGTCTATATCTTACAAAGAAGTAGCCCTGGCTCCACCAGGTACAGTTTTAAAGCCACTGTTGGAAAAGACTGAGATAGACAAGATTAATGCTGAAGATGAGATATCCAGCAGTCTACCTGTGACATCAACCAACGAAGGTACGTTCCGAAGTTCCATAGTTAATGCAGTTTCTCAGCATGATGAAACAGAGGAAACTCAAGAAATCGAACCTCAAAAAGAAAATTCTGCATTGGAAGTTGAAAAGGTTTCCCTTGCTTCTTCTGATCAGGAAAAACCCACAGAAACAAATGGCAGTAAGCTTTCAGCTGCGGCCAAACCTTTCAATCCAGGAATGTTGTCCATGTCTCACCATTTAAATTCAGGTTCCTTCACTAGCATGTATGATACAGATGTTAGTCAAGGCATGAATGTGGAGCCTGTGTTTCCCCCTGCTATTGCTAGGGTCCCTTGTGGACCTAGATCACCTCTATATTACAGAACCAACTATACTTTCCGCATGAAACATGGTTTTAGTAAAAGCCAAACACCCATAGGAGAAAGAAGCGGATTTGGATCTCCAAGAATTATGAATCCTCATGCGCCTGAGTTTGTTCCAAGAAATGCTTCTCAGATAGAAGCCAATGATTCCAATTCAAATGTTTCTGATGAGCATAACTCTTTATCTGAGGGAAGCATGGCAGAAAAAAATAAGCTAGATGAAAATTTCTCTGAAATCAAGGCAAGTTCCACAAAAAACAGTATTTCTGAATCTGAGAAGTCCGAGATAGCAAGGCAGATATTGCTCAGTTTTTTAGTGAAATCTGTCAAGGAAAATATTGACTCTGTGGATGAGTCTAACGAAAGTGAAGGAAAAGTTGGCAAGTTGGAAAATTGTGATGATGAAATAGCTAATGACAGTGCTGTCATAAACATTATGTATGGAAATGAAGAAAAGAGTAAGGCAGTGCCTCATTCCAGTGATAGTGATGAGCAAGAGACATTAGGTGTTAGTGAAAAAAAGAACAGTGATGAAGGGTTCATAGTTGTCTCAAAGAGGAGGAAAAACAGACAGAAGATCACAAATGGAGTCACAGAATTGTACAACCAACAGTCCATTTGTGCATCAGTTCGTTAA 5253 0.4182 MPPRSGKGKSNKAKADKKKKEEKAAAPSLVDITVLTPYDAEILLKGISTDKILDVRKLLAVKVETCHFTNYCLSHEGKGHKLNDRVEIVSLKPCVLRMVEEDYTEEAQAVAHVRRVLDIAQTEFIKPRIETQEKREGPTSEQDEFEPTRDTEWGIQGRVTVVGVATVGDLRQCGDEGHSPDAEALRLLRVLLVVSPLSPHFTWVPLPPHFHYELKRCEVKDEDDRRKGDYFQLQVKICNGKVIEVVVSEKGFYTVGKQSLHSHTLVDLLQQLSRAFANAYESLMKAFLERNKFGNLPYGFRANTWLVPPSVAESPSSFPALPAEDENWGGNGGGQGRNGEFDLRPWATDFAILASLPCKTEEERVLRDRKAFLLHNQFVDTSIFKAVAAIQQVIESNSNMKSELNSSPGAVLHEDRVGDLSIVVKRDIQDGNKKHDSMQVESIMQKDDVQKNLIKGLTADESVVVHDTSSLTVVVVHHCGYTATVKVVGNVNMRKPKVRDIEIDDQPDGGANALNINSLRMLLHKSGSDSLEGNVSSLSILDDEDATRSLVRKVIQEGIEKIKEEPSISKRSIRWELGSCWMQHLQKQETSSDNSSKNKEDGNDVEQAVKGLGKQFKFLKKREKKSNDVDGTDSREQNDSSPGDVNDNADKVEPNSGDFSNSSELEKLLSNEAFLRLKESGTDLHTKSVDELINMAHKFYDEVALPKLAMDFGSLELSPVDGRTLTDFMHLRGLKMRSLGQVVKLAENLPHIQSLCIHEMITRAFKHQLKAVIASVENVADLSAAIASTLNFLLGGSRTEDNDQSLNDDHSLRIQWLRMFLSQRFGWTLNDEFQHLRKLSILRGLCHKVGLELYPRDYDMESIKPFGKNDIISLVPVCKHVGCSSVDGRNLLEASKIALDKGKLEDAVNYGTKALAKMMVVCGPYHRNTASAYSLLAVVLYHTGDFNQGKEMKEREKGKACLRLSEPKYNNESTEFTEGLERVLHGSGPATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMDAFSLSVQHEQTTLKILQAKLGSEDLRTQDAAAWLEYFESKAIEQQEAAKNGTPKPDASIASKGHLSVSDLLDFISPDPKRNDAQRKQRRAKLLPTSDNNQEHEDAVAEESIVFYDSRDAPNMVEENIEETNDTRDYQIPKENSDFTSYRPVTSEVVYEASSDEGWQEANSKGRSGNATNRKFGQKKRPLLSKLSINGSNNYIYRESSSRNEITSPPQRGVPRAMSDVSSPSRQPKARNIALNEDAVNYPTKTSVSKISSPASLSSLASKSISYKEVALAPPGTVLKPLLEKTEIDKINAEDEISSSLPVTSTNEGTFRSSIVNAVSQHDETEETQEIEPQKENSALEVEKVSLASSDQEKPTETNGSKLSAAAKPFNPGMLSMSHHLNSGSFTSMYDTDVSQGMNVEPVFPPAIARVPCGPRSPLYYRTNYTFRMKHGFSKSQTPIGERSGFGSPRIMNPHAPEFVPRNASQIEANDSNSNVSDEHNSLSEGSMAEKNKLDENFSEIKASSTKNSISESEKSEIARQILLSFLVKSVKENIDSVDESNESEGKVGKLENCDDEIANDSAVINIMYGNEEKSKAVPHSSDSDEQETLGVSEKKNSDEGFIVVSKRRKNRQKITNGVTELYNQQSICASVR 1750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1271 1299 - -
Vimu11g02759 1750 Pfam Mitochondrial function, CLU-N-term 49 119 IPR028275 -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1585 1608 - -
Vimu11g02759 1750 FunFam protein TSS isoform X2 1044 1175 - -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1690 1712 - -
Vimu11g02759 1750 Gene3D Tetratricopeptide repeat domain 888 975 IPR011990 GO:0005515
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1274 1292 - -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1186 1215 - -
Vimu11g02759 1750 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 7 1467 IPR027523 GO:0006996
Vimu11g02759 1750 ProSiteProfiles Clueless (Clu) domain profile. 324 596 IPR025697 -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1 23 - -
Vimu11g02759 1750 Pfam Tetratricopeptide repeat 1054 1128 - -
Vimu11g02759 1750 CDD CLU-central 719 860 IPR033646 -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1437 1456 - -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 622 637 - -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1317 1346 - -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1462 1484 - -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1182 1215 - -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1693 1712 - -
Vimu11g02759 1750 Gene3D Tetratricopeptide repeat domain 989 1175 IPR011990 GO:0005515
Vimu11g02759 1750 SUPERFAMILY Hypothetical protein c14orf129, hspc210 227 293 IPR023231 -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 622 663 - -
Vimu11g02759 1750 Pfam Translation initiation factor eIF3 subunit 135 717 859 IPR033646 -
Vimu11g02759 1750 SUPERFAMILY TPR-like 1008 1132 IPR011990 GO:0005515
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1462 1482 - -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 129 149 - -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1585 1600 - -
Vimu11g02759 1750 MobiDBLite consensus disorder prediction 1440 1456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02759 Vimu-Chr11 47878945 47889789 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02759 K03255 - gmx:100784276 2602.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02759 11 47878945 47889789 Vimu11g02759 11 47878945 47889789 ECH