Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02754 ATGGGGGGAGCATGTTCTAGGAAGCGGGAGCAGGACAATGAAGATAGTATTAACAGAGGACTATCACGAAGCTATTCTAAATGTGGGAGTTTGAAGTGGTGGACATCCTCTTTTTCTTATCCATCTGTTGATTTTCACTTACGAAAAGGAGAATGTCCACCACTTTTGGACCTGTGCATACAGAAAATAAACGAGGACATTGATAAATATAACTCATTTTCTATGCTGCCACGGGATATAAGTCAGTTAATTTTTAATAATTTGGTTTACTCGAGATGTCTAACCAGTGCTTCCTTAGAAGCTTTTCGAGATTGTGCTCTACAGGATCTTTACTTAGGAGAATATGACGGTGTTAATGATGATTGGATGGACGTCATCTCATCCCAGGGTTCATCTTTACTTTCTGTAGATCTTTCTGGGTCTGATGTCACTGATTTTGGGCTGACATACCTTAAAGATTGTGGAAGTTTAATTTCTTTGAATCTAAATTACTGTGATCAAATTTCAGATCGTGGACTAGAGTGTATCAGTGGCCTGTCAAACTTGACAAGTTTGAGTTTTAGACGAAATGATTCGATTTCTGCTAAGGGAATGAGTGCCTTTTCTGGTCTTGACAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTGGGATTCATGGAGGCCTTGTTCATCTTCGAGGTTTGACTAAGTTGGAATCTCTCAATTTAAAGTGGTGTAATTGCATAACAGATTATGATATGAAACCTCTTTCAGAGCTTGCAAGCCTGAAAAGTCTGGAGATTTCATCCAGTAAAGTCACTGATTTTGGCGTCAGTTTCCTGAGAGGGTTACAGAAGCTTGCCCTGTTAAATTTGGAAGGGTGCCTTGTAACAGCTGCATGCTTGGATTCTCTTGCAGGGCTTCCTGCGCTATCAAACTTGAATCTTAATAGATGCAATATCTCTGACAATGGATGCAAAAAATTCTCACGATTGACAAAGTTGGAGAGCTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGGTTGGTCAATTTGGCTGGCCATAAGCGATTGAACTGCTTGGAATTGTCTGATACAGAAGTTGGTAGCAATGGACTACAGCATTTATCAGGACTGTCTAATCTGCAGAAAATAAATCTTTCTTTTACCATGGTTAGTGACGGTGGTTTAAGCAAATTGTGTGGACTCTCATCTCTGAAGTCCCTTAATTTGGATGCTTACCAAATTTCTGACATTGGGCTGTCAAACCTTACAAGTTTGACTGGCCTCACTGACCTGGATTTGTTTGGTGCACGAATCACAGATTTTGAGTTTAAGAACCTGAGGTCTTTGGAAATATGTGGCGGAGCTTTGACTGATGCTGGTGTGAAAAATATCAAAGAGCTTTCTTCTCTGGTCTGCTTAAATTTATCACAAAACAGCAATCTTACAGACAAAACTCTTGAGTTAATTTCAGGGCTCACTGGGTTGGTTTCTTTGAATGTTTCAAATTCTCGTATCACCAATGCTGGTCTGCAGCATTTGAAAGCACTCAAGAACTTGAGATCTCTGACATTGGAGTCCTGTAAGGTCACAGCAAATGACATGAAGAAACTGAAATCAATATACCTCCCGAATCTGGTAAGCTTTCGGCCAGAAAGTGAAATTGATCTGAAGGAAGAAAAGGGGGGGCCTGGTAGTGTTGATGCCAAACAAGTGACAGCAGTGACTGTGAATGGCACGATCGATGGATTTAACTTAGTTGGATCAACTAAATTGAAGAGTGCCCTGCATTAA 1779 0.4036 MGGACSRKREQDNEDSINRGLSRSYSKCGSLKWWTSSFSYPSVDFHLRKGECPPLLDLCIQKINEDIDKYNSFSMLPRDISQLIFNNLVYSRCLTSASLEAFRDCALQDLYLGEYDGVNDDWMDVISSQGSSLLSVDLSGSDVTDFGLTYLKDCGSLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSISAKGMSAFSGLDNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELASLKSLEISSSKVTDFGVSFLRGLQKLALLNLEGCLVTAACLDSLAGLPALSNLNLNRCNISDNGCKKFSRLTKLESLNLDSCKIGDEGLVNLAGHKRLNCLELSDTEVGSNGLQHLSGLSNLQKINLSFTMVSDGGLSKLCGLSSLKSLNLDAYQISDIGLSNLTSLTGLTDLDLFGARITDFEFKNLRSLEICGGALTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKALKNLRSLTLESCKVTANDMKKLKSIYLPNLVSFRPESEIDLKEEKGGPGSVDAKQVTAVTVNGTIDGFNLVGSTKLKSALH 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02754 592 PANTHER UNCHARACTERIZED 48 244 - -
Vimu11g02754 592 Gene3D Ribonuclease Inhibitor 127 220 IPR032675 -
Vimu11g02754 592 Gene3D Ribonuclease Inhibitor 349 436 IPR032675 -
Vimu11g02754 592 Gene3D Ribonuclease Inhibitor 437 542 IPR032675 -
Vimu11g02754 592 Pfam Leucine rich repeat 441 501 IPR001611 GO:0005515
Vimu11g02754 592 Pfam Leucine Rich repeat 307 323 IPR001611 GO:0005515
Vimu11g02754 592 Pfam Leucine Rich repeat 156 177 IPR001611 GO:0005515
Vimu11g02754 592 Pfam Leucine Rich repeat 180 202 IPR001611 GO:0005515
Vimu11g02754 592 Pfam Leucine Rich repeat 229 250 IPR001611 GO:0005515
Vimu11g02754 592 Pfam Leucine Rich repeat 326 347 IPR001611 GO:0005515
Vimu11g02754 592 FunFam Leucine-rich repeat family protein 444 543 - -
Vimu11g02754 592 Gene3D Ribonuclease Inhibitor 221 347 IPR032675 -
Vimu11g02754 592 FunFam Leucine-rich repeat family protein 220 298 - -
Vimu11g02754 592 SUPERFAMILY RNI-like 295 537 - -
Vimu11g02754 592 SMART LRR_CC_2 154 179 IPR006553 -
Vimu11g02754 592 SMART LRR_CC_2 326 349 IPR006553 -
Vimu11g02754 592 SMART LRR_CC_2 228 253 IPR006553 -
Vimu11g02754 592 SMART LRR_CC_2 301 325 IPR006553 -
Vimu11g02754 592 SMART LRR_CC_2 397 421 IPR006553 -
Vimu11g02754 592 SMART LRR_CC_2 463 488 IPR006553 -
Vimu11g02754 592 SMART LRR_CC_2 512 536 IPR006553 -
Vimu11g02754 592 FunFam Predicted protein 118 219 - -
Vimu11g02754 592 SUPERFAMILY RNI-like 115 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02754 Vimu-Chr11 47845542 47859504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02754 225 526 Receptor kinase-like Gene Family AT4G13920 25.796 1.45e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02754 - - gmx:100795219 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02754 11 47845542 47859504 Vimu11g02754 11 47845542 47859504 ECH