Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02742 ATGGCCCTTCTTCTCCGTCTCAATCGTCGGAGGGCAACCAGCTCTCGCACCGTCTTCTTCTCTACTTCGAATTCCGATTCTAACTCCGGCTCAAACTCTCCCTTCTCTTCCCTTTTCAGAGGTGTAAGGGAAAGTCTCAAACAACCCTCTTCCCCTTCCCCAAACCCTCGCTCCCAACCACTCTACGCAAACGAGATCCGAAAAAACCTCAGCGAGTTCCGCGCCAAGACCGCTCCACCTCCGCCCGGCGGCCCGTCGCAGCAGAAGCAGCAATTATCGTTCCAGCAAATCTACCAGCGCCACAACGTGCAGGGGAATCCCCCCAGATCGGGAGAATCGCCCTCCTTCAGAATGGATACCATTCGCGAGAGCCTGCGGAAGTTGCCTGGTGCCCGAAACTCGCTGTCGCAGGGCCGTCCTGGGATGATGGGCGGCACGAACGACTTGCCGCAGTCCATTTTCGGGAAAGAGATGAGGAAAGAGGGTACGGAGTCGAAGACGATGTTTTCGGCGGGGTTCTTGAAGACTTACAGCGTGGAGGATTTGGGAACGAAATTGAGGAAGCTGAGGCCGGAGGGAAAGGAAAAGGGTTGGTTTTCAGTGAGGGAGTTGAGTGAGAGGTTGATGAGGTTGAGGAAGATGGAGGAGGAGCAAGCCCGTTCCAATATCCATGATTCTACTATTGACGCAATAAGGGGATGTCTCGTTGAGATTAATCAAGAGCAAAATCTTGCCGCGAAGAAAGCTTCATGTCATGGGACTCCAACCTTCTCTCTGGAACCTCCTAAACCCCATCTTGTTGAAAAGTACTTTCATCCGGATAACATGTCCTCCGCTGAGAAGATGAAAGTTGAGCTTGCGAAGGTTAGGGATGAGTTTAAAATGTCGGAGTCGGACTGCGGTTCTGCGCGTGTTCAAATTGCACAACTCACAACTAAGATTAAGCATCTATCAGCAGTCCTACACAAGAAGGATGTTCATTCTCGTAAAGGATTGATAGCAATGGTTCAGAGGAGAAAAAGATTACTGAAATACCTCAGAAGAACTGATTGGGATTCCTATTGCTTTGTTATCTCTAAGCTGGGTCTTCGTGATAATCCTGAGCATAGCTATAGATCTCGAACTAGTATGGCAACTTAG 1140 0.5009 MALLLRLNRRRATSSRTVFFSTSNSDSNSGSNSPFSSLFRGVRESLKQPSSPSPNPRSQPLYANEIRKNLSEFRAKTAPPPPGGPSQQKQQLSFQQIYQRHNVQGNPPRSGESPSFRMDTIRESLRKLPGARNSLSQGRPGMMGGTNDLPQSIFGKEMRKEGTESKTMFSAGFLKTYSVEDLGTKLRKLRPEGKEKGWFSVRELSERLMRLRKMEEEQARSNIHDSTIDAIRGCLVEINQEQNLAAKKASCHGTPTFSLEPPKPHLVEKYFHPDNMSSAEKMKVELAKVRDEFKMSESDCGSARVQIAQLTTKIKHLSAVLHKKDVHSRKGLIAMVQRRKRLLKYLRRTDWDSYCFVISKLGLRDNPEHSYRSRTSMAT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02742 379 Pfam Ribosomal protein S15 288 364 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vimu11g02742 379 SMART Ribosomal_S15_2 286 364 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vimu11g02742 379 Hamap 30S ribosomal protein S15 [rpsO]. 276 365 IPR005290 GO:0003735|GO:0005840|GO:0006412
Vimu11g02742 379 MobiDBLite consensus disorder prediction 126 152 - -
Vimu11g02742 379 PANTHER S15/NS1, RNA-BINDING PROTEIN 1 370 - -
Vimu11g02742 379 MobiDBLite consensus disorder prediction 20 61 - -
Vimu11g02742 379 NCBIfam 30S ribosomal protein S15 287 364 IPR005290 GO:0003735|GO:0005840|GO:0006412
Vimu11g02742 379 SUPERFAMILY S15/NS1 RNA-binding domain 285 365 IPR009068 -
Vimu11g02742 379 Gene3D - 331 366 - -
Vimu11g02742 379 MobiDBLite consensus disorder prediction 74 93 - -
Vimu11g02742 379 CDD Ribosomal_S15p_S13e 288 362 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vimu11g02742 379 Gene3D - 279 329 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02742 - - gmx:100820600 382.489