Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02740 ATGACTGTGAAAGATTTTCCTGAAGAATGTTGGGAATCAGTCTTCAGATTCCTTGGCCTTAGTCATCATCATTTGGAGTCTCTATCTCTGGTTTGCAAGCAGTTTCTTGCCATTACAAATAGGCTTCAATTCTCTCTCACAGTGTATGATCCAACCATTCCACTTCTTCCTCGGTTGTTCCTTAGATTTCCAAGGCTCAAAATCTTAGACCTGAGTCTATTGAATGGTCACCATGAAGGCTTGCTTCGTCAAATTTCACAATCTGGGTTGGAGCTTGATTTGATTAATCTATCCAACCAGAGAACACTTCCTGTTGATGGCTTGCGAGAACTTGGCTCAAACATGAAAAACTTGAGGGTTCTGATCTGCTCAAACATTGGCTCTCTTCGTGATAGTCATCTGGTGATCATAGCTTATTGTTTCCCATTGCTTGAAAAGCTTGACATAAGCTTCCCATTGAATTCTCAAGCATCTGATTTTGGGGTTCTAAGGCTGTCTTCTATGCTTGAGAATCTTCGCAAGATTAATATCTCTGGTAATCATTTGATCACTGATAAATCATTGTTCTCTCTTTGCCAAAACTGTTTGTCATTGGAAGAGATTTCATTCTTCATCTGTTTTAAGATCACTCAAACAGGCATTGCCTCTGCGATCCGCCTCAGACCCGGTTTGAGCTCCATTGCCTTTAACATTGAAAAGAAAAGAATACATGGACCTGGTTTAACACTCACCCCCATTGACTTGAATTTGATCGATTCATTCAGAACTTTGAAAAGGTTAACTGCTATTGATTTGTCCAATTCTGTTATCTCAGATGAGTTTCTCTTTGCGGTTGCAGAAGGTGCAGGTCTTCTGCTAAAGAAGCTTATCCTCCAAGACTGTTGCAATTGTACATTTTCAGGAATCTCTTATTTGTTATCCAAATGCCAATCTGTTCAATGCTTGGATCTTCGGAAAGTTGATTTTTTAACTGATCAATGTATCAGCAAGTTATCTGTATTTCTTCTTAGCCTAACCACTATAAACCTCAGTGGTTGTTGCCAGCTGACAAATTCAACATTTTTCATTCTCACAAGAAACTGTCCTTTGCTCAGTGAGATCAAAATGGAAAGGACATATCTTGGGGTGGAAGGGGAAGAAGATTCAATGAGGGATTTTTCTGTCAACCATGAAGTGAAAAAAGTGTTTTTGGGTGATAATGTTTTGCTGAGTGATGCAAGTTTAGTAAAATTTGTTTCCATTTGCCCCAGTTTGCAGCTTCTTGACTTAATCGGTTGTGAGGGTGTTTCTGGTGAAGGTGTTGTTGAGGTTTTGAAGAGATGCAGTGAGATAAGGCATTTGAACCTGGCTAATACAGGAATGAAAGTGTTTGATATAGACTTTGAAGTTTCGAACCTGAAGGTGTTGAACTTGTCAGGGTCAGAAATTGAGGATGAAACTCTCTCAGTAATTTCAAGAAGGTGTGGTGGACTACTACTTCTGGACATTCAGAGTTGCTGGCGTGTTACAGCAAAGGGTGTTAGAGAAGTAGTAGAAAACTGCAAGACATTGAAGGAGTTGAATCTGAAGAATTGTAGGTTGGTGAGTGATGATTTTGTTGCTTGGTTGGAGTTTTCAAAACCATCATTGAGAATAATAGTCACACCTACTGATGTTGGTGCTTATTACTGA 1671 0.3938 MTVKDFPEECWESVFRFLGLSHHHLESLSLVCKQFLAITNRLQFSLTVYDPTIPLLPRLFLRFPRLKILDLSLLNGHHEGLLRQISQSGLELDLINLSNQRTLPVDGLRELGSNMKNLRVLICSNIGSLRDSHLVIIAYCFPLLEKLDISFPLNSQASDFGVLRLSSMLENLRKINISGNHLITDKSLFSLCQNCLSLEEISFFICFKITQTGIASAIRLRPGLSSIAFNIEKKRIHGPGLTLTPIDLNLIDSFRTLKRLTAIDLSNSVISDEFLFAVAEGAGLLLKKLILQDCCNCTFSGISYLLSKCQSVQCLDLRKVDFLTDQCISKLSVFLLSLTTINLSGCCQLTNSTFFILTRNCPLLSEIKMERTYLGVEGEEDSMRDFSVNHEVKKVFLGDNVLLSDASLVKFVSICPSLQLLDLIGCEGVSGEGVVEVLKRCSEIRHLNLANTGMKVFDIDFEVSNLKVLNLSGSEIEDETLSVISRRCGGLLLLDIQSCWRVTAKGVREVVENCKTLKELNLKNCRLVSDDFVAWLEFSKPSLRIIVTPTDVGAYY 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02740 556 FunFam F-box/LRR-repeat protein 20 461 548 - -
Vimu11g02740 556 SUPERFAMILY RNI-like 289 546 - -
Vimu11g02740 556 SMART LRR_CC_2 514 541 IPR006553 -
Vimu11g02740 556 SMART LRR_CC_2 463 487 IPR006553 -
Vimu11g02740 556 SMART LRR_CC_2 488 513 IPR006553 -
Vimu11g02740 556 SMART LRR_CC_2 415 440 IPR006553 -
Vimu11g02740 556 SMART LRR_CC_2 335 360 IPR006553 -
Vimu11g02740 556 SMART LRR_CC_2 195 220 IPR006553 -
Vimu11g02740 556 SMART LRR_CC_2 169 194 IPR006553 -
Vimu11g02740 556 SMART LRR_CC_2 257 281 IPR006553 -
Vimu11g02740 556 Gene3D Ribonuclease Inhibitor 458 548 IPR032675 -
Vimu11g02740 556 Gene3D Ribonuclease Inhibitor 381 457 IPR032675 -
Vimu11g02740 556 Gene3D Ribonuclease Inhibitor 238 376 IPR032675 -
Vimu11g02740 556 Gene3D Ribonuclease Inhibitor 1 237 IPR032675 -
Vimu11g02740 556 PANTHER UNCHARACTERIZED 337 532 - -
Vimu11g02740 556 FunFam F-box/LRR-repeat protein 4 240 375 - -
Vimu11g02740 556 Pfam F-box domain 5 43 IPR001810 GO:0005515
Vimu11g02740 556 SUPERFAMILY RNI-like 53 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02740 Vimu-Chr11 47708765 47710435 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02740 K10268 - gmx:100811565 913.679