Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02727 ATGGACTACAGCTCCGAAGAAGATTCAGATCTAAGTGAATCTGAGATTCATGACTACTCAGAGAAACCTTATGAACTGTTAAGGGCTGGAAAATATAAGGTTAAAAACTTGAATGGAACTCTTAGATGCCCTTACTGTGCTGGGAAGAAAAAACAAGACTACAAATATAAGGATTTATTACAACATGCATCTGGTGTTGGTAAGGGTTCTGCTAACAGAAGTGCAAAACAAAAGGCAAACCACCTTGCTCTAGCAAAGTATTTGGAGATTGATCTAGCTAGTGAAGCAGATCCAATCCAGAACCCAGCTTTACCCCCAGTTGTTAGTCAACCTTCACAAGTAGAATATCTTTATTATGTTTGGCCCTGGACTGGCATAATTGTTAACATAAAGGGTAAATTGATTGACTCTACACACTGGTTGAAGGAATTTGCTAAATTCAGACCAACTGATTCCCATATATTTATGAAAGATGGTGACATGGCTGCTCAAGCTGTAGTAGTGTTCAATAGTGACTGGAATGGTTTCATAAATGCAACTGAATTTGAGAAGTCTTTTGAAACTGCACGTCATGGTAAAAAGGACTGGAGCTCAAACAAGTTAGAAGCTGACTCAAATATTTATGGATGGGTCGCCCGCGAAGATGATTATAATTGTGGAGGGCCAATAGGGGAATACCTCCGCAGCAAAGGAACATTGAGGACAGTTTCAGATATTGTTCAAGAAGCATCTGAATGCAGAAATAATATTGTGACAAACCTCGCGAAAGAAATCGAGATAACAAATGACAGCCTTGACGAAATGCAGTCTAAGTTTAATATGAAGACTATGTCCTTGAGTAGAATGCTTGAGGAGAAAGATAAGCTTCACAATGTTTTTGAAGAAGAAACAAGGAGTATGCAGCGTAGAGCACGTAATGAGGTAAGGCGGATCTTGGATGAGCAAGAAAAATTGAGTAGTGAATTGGATGAGAAAAGGCGGAAGCTTGATTCTTGGAGCAGAGATCTAAACAAGCGTGAGGTACTGACTGATCAAGAGAGGCAGAAACTTGCAGACGACAAGAAGAAGAAAGATTTGAGGAATGAATCACTCCTGTTGGCTTCAAAAGAACAGAAGATAGCGGATGAAAATGTCTTAAGACTTGTTGAAGAGCAGAAGAGAGAGAAAGAGGAGGCCTATAACAAGATACTTCAGCTGGAAAAACAGCTTGATGCCAAACAGAAATTGGAAATGGAAATCGAAGAGCTAAAAGGGAAATTGCAAGTTATGAAGCATCTTGGAGATGAAGATGATACAGCTGTTCAGAAAAGGATAGAAGAAATGAATGAGGAATTGCAAGAAAAAATAGAGAATTTGGAATCTGTGGAGAGCATGAATCAAACCCTCATTGTGAAGGAACGTCAGAGTAATGATGAACTGCAGCAAGCTCGCAAAGAATTAATAAAAGGGTTAGAGGATATGCTTAATGGTCCTAAAGGTAGTAATATTGGGCTCAAGAGAATGGGAGAGCTTGATCAGAAGGTTTTTGTGAATAAATGCAAGGAAAGATTTTCTCCTCAAGAAGCTGGGACCAAAGGTGAAAACGTGAAGAATTCTGCTTGGCATCCATTTAAAGTGATCAATACTGATGATAAACCAGAGGTACGAACCACCTTGACATGCTTTGCGTTCATAATGAAGTTCAGCCTCAATTGGTTATCTGATGCTACTCGTAAATTTCTGCTCACACACATTGAAGATTTCTGCTCACACACAATTGGTTATCTGATGTTAAAAATTATAGATGAAAATGATGACAAGTTACGAAGCCTCAAGCAGGAATGGGGAGATGAGATATATTCAGCAGTTGTAACAGCCGTGACAGAAATAAACGAATACAATGCAAGTGGTGGATATACTGTTGCAGAGCTATGGAACTTCAAGGAAAAAAGAAAGGCTACATTGAAAGAAGTTATCACTTATATTGTGGAACGTATCAAGCCAGCAGCTAAGCGCAAGAGACGATAG 2007 0.3916 MDYSSEEDSDLSESEIHDYSEKPYELLRAGKYKVKNLNGTLRCPYCAGKKKQDYKYKDLLQHASGVGKGSANRSAKQKANHLALAKYLEIDLASEADPIQNPALPPVVSQPSQVEYLYYVWPWTGIIVNIKGKLIDSTHWLKEFAKFRPTDSHIFMKDGDMAAQAVVVFNSDWNGFINATEFEKSFETARHGKKDWSSNKLEADSNIYGWVAREDDYNCGGPIGEYLRSKGTLRTVSDIVQEASECRNNIVTNLAKEIEITNDSLDEMQSKFNMKTMSLSRMLEEKDKLHNVFEEETRSMQRRARNEVRRILDEQEKLSSELDEKRRKLDSWSRDLNKREVLTDQERQKLADDKKKKDLRNESLLLASKEQKIADENVLRLVEEQKREKEEAYNKILQLEKQLDAKQKLEMEIEELKGKLQVMKHLGDEDDTAVQKRIEEMNEELQEKIENLESVESMNQTLIVKERQSNDELQQARKELIKGLEDMLNGPKGSNIGLKRMGELDQKVFVNKCKERFSPQEAGTKGENVKNSAWHPFKVINTDDKPEVRTTLTCFAFIMKFSLNWLSDATRKFLLTHIEDFCSHTIGYLMLKIIDENDDKLRSLKQEWGDEIYSAVVTAVTEINEYNASGGYTVAELWNFKEKRKATLKEVITYIVERIKPAAKRKRR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02727 668 Coils Coil 301 335 - -
Vimu11g02727 668 Coils Coil 379 426 - -
Vimu11g02727 668 Pfam XH domain 499 662 IPR005379 -
Vimu11g02727 668 Pfam XS domain 119 218 IPR005380 GO:0031047
Vimu11g02727 668 Coils Coil 251 271 - -
Vimu11g02727 668 PANTHER RIBONUCLEASE P SUBUNIT P38 3 667 IPR045177 GO:0080188
Vimu11g02727 668 Coils Coil 431 479 - -
Vimu11g02727 668 Pfam XS zinc finger domain 43 85 IPR005381 GO:0031047
Vimu11g02727 668 Gene3D XS domain 117 273 IPR038588 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02727 Vimu-Chr11 47644618 47649895 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02727 - - pvu:PHAVU_010G160300g 1060.44