Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02706 ATGGCTGCTGCGACTGCTGCTGGGGTTGTTGGTGGTAATGCTTCGTCTGCTTCCTGGATGCGATTCAAAGGCAAGGAAAGAAAGCATGCCAAGATGAATAGATCTAGGGTCTGTTGCTCTTATTCTTCTTCTGTCATGGATCCTTACAAGACCTTGAGAATACAACGAGGTGCCTCTGAATCTGAAGTCAGGAAGGCTTTCCGACAGCTCGCTCTGCAGTACCATCCAGATGTATGCAGAGGGAGCAATTGTGGGGTGCAATTTCACGAAATCAACGAGGCATATGATACTGTGATGGCTAGGTTGAGAGGAGAATCAACTGCGACAGAAACTTACGAGAGCATCTATGATAATGACACAGACGAGTCACTGAGAGAAACGAACGGCCCAGATTATGACATGTGGGAGGAGTGGATGGGATGGGAAGGAGCAGGAATCCGTGACTACACTTCACATATTAATCCATACATATGA 474 0.4705 MAAATAAGVVGGNASSASWMRFKGKERKHAKMNRSRVCCSYSSSVMDPYKTLRIQRGASESEVRKAFRQLALQYHPDVCRGSNCGVQFHEINEAYDTVMARLRGESTATETYESIYDNDTDESLRETNGPDYDMWEEWMGWEGAGIRDYTSHINPYI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02706 157 Pfam DnaJ domain 47 98 IPR001623 -
Vimu11g02706 157 SUPERFAMILY Chaperone J-domain 43 141 IPR036869 -
Vimu11g02706 157 SMART dnaj_3 46 103 IPR001623 -
Vimu11g02706 157 FunFam chaperone protein dnaJ 8, chloroplastic 20 108 - -
Vimu11g02706 157 CDD DnaJ 47 97 IPR001623 -
Vimu11g02706 157 PANTHER CO-CHAPERONE PROTEIN DJLA 35 155 - -
Vimu11g02706 157 ProSiteProfiles dnaJ domain profile. 47 120 IPR001623 -
Vimu11g02706 157 PRINTS DnaJ domain signature 49 67 IPR001623 -
Vimu11g02706 157 PRINTS DnaJ domain signature 83 103 IPR001623 -
Vimu11g02706 157 PRINTS DnaJ domain signature 67 82 IPR001623 -
Vimu11g02706 157 Gene3D DnaJ domain 20 105 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02706 Vimu-Chr11 47543518 47544478 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02706 - - gmx:100780336 271.937