Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02697 ATGAAGCTCACGGTGAAGACTTTGAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCCTCCGACACTGTCAGTAATCTCCTTCTCAATCCAGCTCTCTCCCCCTCTCCCCCTTTCCACGCACTCTCTCCCCTTTTCCTTACCTCTTCGGATTTTGTATGTTCCTTGCGTGATACTCAGTCTCCAAATGCCGATGTTATTTTGGATAAAGTTTTCCTGCTTCCTTCACATCAGGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAGGGCAAAGATAATTACCCGTGTGGACAACAATTGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTTGAGAACAAAGTATCTGAAGATGGCTTTCTTGTTGTTATGCTTAGCAAGAGTAAAGCATCAGGTTCTGCTGCAGCTCCAACTGTTCAGCCTGCCAGCAGTCCTGCTACAACCGTATCAACATCCAATTCCAACCCAGCTTCTGATCCTCCAGTGCAGACTCAGGCTGCGAACAACAGCACATCTAGCACGGATGCCCCAACTACCAATGTTTCTGCAGACACTTATGGTCAGGCTGCATCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATCATGGACATGGGCGGGGGCAATTGGGACAGAGACACTGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGGGCGATTGATTACCTGTATTCTGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTAACTACCCAGGTAGTCAAACAACTGAAACAGCTGGGATTCCTTCTGGAGCAGTTCCAGTTGGACCTAATTCATCTCCCTTAAATATGTTTCCTCAGGAGACAATTTCAAGTACTGGGGCCGGACTTGGATCTCTGGACTTCCTTAGAAATAATCCCCAGCTGCAACAAGGATGGCTGAGGTTGGCCAGAAGAGATTTCTGTCAGCACTGGGCTGTGGTGGGCAGTGCTGATTGGAGCTACAACAGTCATGGGAACACAGAACTGAGTGCAATGGGAAGTGTGGAAGCTTTGGCTAGGGCATCAAAGAAGAAAGTGTGGAACCAAAGAGAAGAGTTTCAAGCTTTGCGTTCAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTGCTTCAGGAACTGGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCACGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGAGATATATTTGACCAACCTGAGCAAGACATGCCTCATGCCATCAACGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGACAGAGCTTCGGTGATAGAGGCATTTTTGGCATGTGACCGTGACGAGCAACTGGCAGCCAACTACTTATTGGAGAATGCTGGAGACTTTGAAGATTAA 1455 0.466 MKLTVKTLKGSHFEIRVQPSDTVSNLLLNPALSPSPPFHALSPLFLTSSDFVCSLRDTQSPNADVILDKVFLLPSHQVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKASGSAAAPTVQPASSPATTVSTSNSNPASDPPVQTQAANNSTSSTDAPTTNVSADTYGQAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPNYPGSQTTETAGIPSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQLQQGWLRLARRDFCQHWAVVGSADWSYNSHGNTELSAMGSVEALARASKKKVWNQREEFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02697 484 PRINTS DNA repair protein Rad23 signature 434 450 IPR004806 GO:0006289
Vimu11g02697 484 PRINTS DNA repair protein Rad23 signature 466 481 IPR004806 GO:0006289
Vimu11g02697 484 PRINTS DNA repair protein Rad23 signature 451 465 IPR004806 GO:0006289
Vimu11g02697 484 PRINTS DNA repair protein Rad23 signature 385 407 IPR004806 GO:0006289
Vimu11g02697 484 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 438 478 IPR015940 -
Vimu11g02697 484 Pfam XPC-binding domain 363 414 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vimu11g02697 484 Gene3D - 196 246 - -
Vimu11g02697 484 FunFam UV excision repair protein RAD23 69 135 - -
Vimu11g02697 484 CDD UBA1_Rad23_plant 197 246 - -
Vimu11g02697 484 SMART ubq_7 53 130 IPR000626 GO:0005515
Vimu11g02697 484 Pfam Ubiquitin family 74 131 IPR000626 GO:0005515
Vimu11g02697 484 CDD Ubl_Rad23 1 129 - -
Vimu11g02697 484 FunFam UV excision repair protein RAD23 homolog 196 246 - -
Vimu11g02697 484 Gene3D - 1 135 - -
Vimu11g02697 484 SMART uba_6 440 477 IPR015940 -
Vimu11g02697 484 SMART uba_6 203 243 IPR015940 -
Vimu11g02697 484 ProSiteProfiles Ubiquitin domain profile. 74 134 IPR000626 GO:0005515
Vimu11g02697 484 Gene3D - 431 479 - -
Vimu11g02697 484 Gene3D - 360 416 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vimu11g02697 484 FunFam UV excision repair protein RAD23 homolog 431 479 - -
Vimu11g02697 484 Pfam UBA/TS-N domain 203 241 IPR015940 -
Vimu11g02697 484 Pfam UBA/TS-N domain 440 475 IPR015940 -
Vimu11g02697 484 SUPERFAMILY UBA-like 200 251 IPR009060 GO:0005515
Vimu11g02697 484 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 201 244 IPR015940 -
Vimu11g02697 484 MobiDBLite consensus disorder prediction 136 187 - -
Vimu11g02697 484 SMART CBM 358 400 IPR006636 -
Vimu11g02697 484 PANTHER UV EXCISION REPAIR PROTEIN RAD23 74 473 - -
Vimu11g02697 484 SUPERFAMILY Ubiquitin-like 73 145 IPR029071 -
Vimu11g02697 484 NCBIfam UV excision repair protein Rad23 73 312 IPR004806 GO:0006289
Vimu11g02697 484 SUPERFAMILY UBA-like 419 481 IPR009060 GO:0005515
Vimu11g02697 484 SUPERFAMILY XPC-binding domain 364 422 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02697 Vimu-Chr11 47495263 47501417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02697 K10839 - gmx:100819019 550.051