Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02684 ATGTCTTCCTCCAACACTAACTCTCACTCTAAACCTCAACCTCAGGCATGTCTTTTTCATCGCGAAGGGAACATGGCATTGCAAACCCATTCTCCGTCTCACGCGCACAATAGCAACAAGCATGGGCACGGAGTCTTTGGAGACGTCTACACCATCACCAAGGACATGCACGCCGATCATCACAACCCTTCCTTTGATTTTCATTTTCGCCTTCCCCCGCTTCCGAATTTTCTGGGCTCTAGAGAGGCCCGCGAGTTTTTCAGCGGTGCCCTTGCAGGGGCAATGACAAAGGCGATACTTGCTCCTCTTGAGACCATTAGGACAAGAATGGTTGTTGGTGTTGGATCCAGAAATATTGCTGGCAGTTTCGTAGAGGTTATACAGCAGCAGGGATGGCAGGGATTGTGGGCTGGAAACATGATCAATATGCTTCGTATAGTTCCAACACAGGCTATTGAGATGGCCACATTTGAGTGCGTCAAAAGGACTATGACATCCCTGCAAAACAAATGGGAAGAGGCTGGCCACCCCAAGTTGCAGATAGGTTTCATCGATTTCAACCTGCCCATGTCTTGGATTTCACCAGTTGCTGTCGCTGGTGCCGCAGCAGGAATTGCTAGCACACTCGTATGCCATCCCCTCGAAGTTTTGAAGGACCGGCTAACCGTTAGTCCTGAAATCTACCCTACTTTAGGTATTGCGATTAGAAATATTTATAAAGATGGTGGTGTTGGCGCTTTTTATGCTGGTATCTCACCGACACTAGTTGGAATGCTTCCATACAGTACATGCTATTATTTCTTGTATGATACCATGAAGGATTCTTACTGCCAGACCAAAAATAAGAAAACTCTAAATCGTCCAGAGATGCTTTTGATTGGAGCTCTAGCAGGTTTTACTGCCAGTACAATTAGCTTCCCATTGGAGGTGGCTAGGAAGCGGCTGATGGTGGGCGCTTTGCAAGGTAAGTGCCCACCAAACATGGCAGCAGCACTTACGGAAGTAATTAGAGAAGAAGGTCTGAAAGGTTTGTACAGAGGATGGGGTGCAAGCTGTTTAAAGGTGATGCCATCCTCTGGTATCACCTGGATGTTTTATGAAGCATGGAAAGACATATTGCTTGTCCAGAATGGAAACCCATTTTAG 1146 0.4677 MSSSNTNSHSKPQPQACLFHREGNMALQTHSPSHAHNSNKHGHGVFGDVYTITKDMHADHHNPSFDFHFRLPPLPNFLGSREAREFFSGALAGAMTKAILAPLETIRTRMVVGVGSRNIAGSFVEVIQQQGWQGLWAGNMINMLRIVPTQAIEMATFECVKRTMTSLQNKWEEAGHPKLQIGFIDFNLPMSWISPVAVAGAAAGIASTLVCHPLEVLKDRLTVSPEIYPTLGIAIRNIYKDGGVGAFYAGISPTLVGMLPYSTCYYFLYDTMKDSYCQTKNKKTLNRPEMLLIGALAGFTASTISFPLEVARKRLMVGALQGKCPPNMAAALTEVIREEGLKGLYRGWGASCLKVMPSSGITWMFYEAWKDILLVQNGNPF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02684 381 SUPERFAMILY Mitochondrial carrier 84 367 IPR023395 -
Vimu11g02684 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 80 163 IPR018108 -
Vimu11g02684 381 PANTHER SOLUTE CARRIER FAMILY 25 82 373 - -
Vimu11g02684 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 191 275 IPR018108 -
Vimu11g02684 381 Pfam Mitochondrial carrier protein 83 165 IPR018108 -
Vimu11g02684 381 Pfam Mitochondrial carrier protein 289 374 IPR018108 -
Vimu11g02684 381 Pfam Mitochondrial carrier protein 197 276 IPR018108 -
Vimu11g02684 381 Gene3D Mitochondrial carrier domain 80 377 IPR023395 -
Vimu11g02684 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 285 372 IPR018108 -
Vimu11g02684 381 PRINTS Mitochondrial carrier protein signature 98 112 IPR002067 GO:0055085
Vimu11g02684 381 PRINTS Mitochondrial carrier protein signature 138 158 IPR002067 GO:0055085
Vimu11g02684 381 PRINTS Mitochondrial carrier protein signature 248 266 IPR002067 GO:0055085
Vimu11g02684 381 PRINTS Mitochondrial carrier protein signature 85 98 IPR002067 GO:0055085
Vimu11g02684 381 PRINTS Mitochondrial carrier protein signature 294 316 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02684 Vimu-Chr11 47445269 47447691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02684 61 381 Organic Solute Cotransporters AT3G20240 72.897 4.98e-177 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02684 - - gmx:100777341 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02684 11 47445269 47447691 Vimu11g02684 11 47445269 47447691 ECH