Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02682 CAAAAGCTCTATGCAATGTCTCTCAGAAGCAGCGGTTTCTTTTGGTTTCAAATAAATTGCTCCGATTCGAAGCAAGGTGGTCGTGGTTTTGGAGAAAACTCCAACAGGATTAAGACCAACAAATCTGACAAGGGTTTCGTGTCTCAGCAAAGTGTCAAGGGACCAGCACCTAAACAGTCTCGCTCTCTGTCTTCTCAGGCACCCCGTTTAAGTTCACAACTTGACGGCAAATCTAGGAACGATTTTTTGGATGTTGACTTTGAGGAACGCCTAAAAACAGTTAGAAGGTCAGCACTTGAGCAGAAGAAGGCAGAGGAGCAAAAGGAGTTTGGAGCAATTGACTATGATGCACCAGTTTCTTCCGACGAAAAGACAATTAGCCTTCCTACTAAGATTGGAGTGGGGGTAGCTGTTGTAGTCTTCGGTCTGGTTTTTGCTTTTGGAGATTTTCTTCCATCTGGAAGTGTTAGTCCTACGGATGAAAGTGCTGTTGTCAATAGTAAGTTGTCCGAGGAGGAGAAAGCTACTCTCCAGAATCCTATTTTTCCCTTAGATACCAGTACTACTCCTGGAGTAACTAAGGAGTACTATACTCCTTCCATTAGGGAAATCATTTATGGTATACTTTGTGATATATGGCAGAGTAGGCTCAAGGAATTTGAAGCAACATTAAGTATTTCCCCCAGAGATCCAACTGCTCTTGAAGGAGCTGCAGTAACTTTGGCAGAACTAGGGGAATATGCAAGAGCTGCTTCTCTACTTGATGATTTGACGAAGGTTAAACCAAGTGATGCTGATGTTTTTCGTTTGCTTGGAGAAGTTAAGTACGGACTCAAGGATTATGAAGGGAGTGTTGCTGCATATAAAAGTTCAGCAAAGGTGTCCAAAGATATCCAATTAGAAATCCTTCGTGGCCTTACCAATTCATTACTTGCTGCCAAAAAGCCGGAGGAGGCTGTTCAATTACTTTTGACTTATCGTAAGGATTTGAGTTCCGAAAACTTAAGCAAAAGTTCTAATGGCAACCCATCAGACTCACAGAAGCTGGACCCTGTCCAAGTTGAATTACTTCTAGGGAAAGCCTACTCAGATTGGGGCCATGTCAGTGATGCTGTAGCTGTTTATGATCAACTCATATCCACTTACCCTAATGATTTTCGTGGATACTTAGCTAAGGGAATCATCCTAAAAGAAAACAAAAATATTGGTGACGCTGAAAGAATGTTCATACAAGCTAGGTTCTTTGCACCAGATAAAGCCAAAGCACTTGTGGACCGTTATTCAAGATGA 1290 0.4209 QKLYAMSLRSSGFFWFQINCSDSKQGGRGFGENSNRIKTNKSDKGFVSQQSVKGPAPKQSRSLSSQAPRLSSQLDGKSRNDFLDVDFEERLKTVRRSALEQKKAEEQKEFGAIDYDAPVSSDEKTISLPTKIGVGVAVVVFGLVFAFGDFLPSGSVSPTDESAVVNSKLSEEEKATLQNPIFPLDTSTTPGVTKEYYTPSIREIIYGILCDIWQSRLKEFEATLSISPRDPTALEGAAVTLAELGEYARAASLLDDLTKVKPSDADVFRLLGEVKYGLKDYEGSVAAYKSSAKVSKDIQLEILRGLTNSLLAAKKPEEAVQLLLTYRKDLSSENLSKSSNGNPSDSQKLDPVQVELLLGKAYSDWGHVSDAVAVYDQLISTYPNDFRGYLAKGIILKENKNIGDAERMFIQARFFAPDKAKALVDRYSR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02682 429 SMART tpr_5 352 385 IPR019734 GO:0005515
Vimu11g02682 429 SMART tpr_5 386 419 IPR019734 GO:0005515
Vimu11g02682 429 SMART tpr_5 231 264 IPR019734 GO:0005515
Vimu11g02682 429 SMART tpr_5 265 298 IPR019734 GO:0005515
Vimu11g02682 429 Gene3D Tetratricopeptide repeat domain 210 427 IPR011990 GO:0005515
Vimu11g02682 429 SUPERFAMILY TPR-like 220 422 IPR011990 GO:0005515
Vimu11g02682 429 Pfam Tetratricopeptide repeat 239 291 - -
Vimu11g02682 429 ProSiteProfiles TPR repeat profile. 352 385 IPR019734 GO:0005515
Vimu11g02682 429 MobiDBLite consensus disorder prediction 25 77 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02682 - - pvu:PHAVU_010G164800g 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02682 11 47433018 47442622 Vimu11g02682 11 47433018 47442622 ECH