Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02676 ATGTGGAGGCTGAAGGTGGCAGATGGTGGAAAGGATCCTTACATTTTCAGCACAAACAATTTCGTAGGGAGACAGATATGGGAGTACGATCCAGACGCCGGTAGCAGCGAGGAACGCGCCGAGGTGGAGGCAGCAAGAAACAATTTCTACCAAAATCGCTTCAAGGTCAAGCCCTGTGCTGACCTCCTTTGGCGCTTTCAGGTTCTGAGAGAGAATAACTTCAAACAAACAATTCCTAGTGTGAAGATAGAAGATAGAGAAGAAATAACTTACGAGAAAGTGACAGCAGCTGTTAAAAGAGGTGCATATCATCTCTCTGCATTGCAGACCAGTGATGGCCATTGGCCTGCGCAAATTGCAGGTCCTCTGTTTTTCCTTCCTCCTCTCGTATTCTGCATGTATATTACAGGGCATCTGGAATCAGTATTTCCAGAAGAGCATCAGAAAGAAATTCTCCGCTACATATACTATCACCAGAATGAAGATGGAGGATGGGGACTGCATATTGAGGGTCACAGCACCATGTTTTGTACTGCACTGAATTATATATGTATGCGGATTCTTGGAGAAGGACCCAATGGAGGTCATGACAATGCTTGTGCTAGGGCAAGAAAGTGGATTCAGGATCATGGAAGTGTAACACACATACCTTCATGGGGAAAAACTTGGCTTTCGATACTTGGTGTATTTGATTGGTGTGGAAGTAACCCAATGCCTCCAGAGTTTTGGATCCTTCCTTCCTTTCTTCCTATGCATCCGGCTAAGATGTGGTGTTACTGTCGATTGGTGTACATGCCTATGTCTTACTTATATGGAAAGAGGTTTGTTGGTCCAATTACGCCTCTCATTTTACAATTGAGAGAAGAACTATTTACAGAACCCTATGAAAAAGTTAACTGGAAGAAAGCGCGTCACCAATGTGCAAAGGAAGATCTGTACTATCCTCATCCTTTGATACAAGATCTAATATGGGACAGTTTATACTTATTTACGGAGCCATTACTAACTCGTTGGCCTTTCAACAAGCTGGTTAGAGAAAAAGCTCTTCAGGTGACAATGAAACATATTCATTACGAAGATGAGACCAGTCGATACATTACCATTGGTTGCGTGGAAAAGGTTTTATGCATGCTTGCTTGTTGGGTGGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTGCCAGATTACTTATGGATGTCTGAAGATGGAATGACCATGCAGAGTTTTGGCAGTCAAGAATGGGATGCTGGTTTTGCAGTTCAAGCTTTGCTTGCCACTAACCTTGTTGAGGAAATTGGTCCAACACTAGCAAAAGGACATTATTTCATTAAGGAGTCTCAGGTAAGGGATAACCCTTTTGGAGATTTCAAGGGTATGTATCGTCATATTTCAAAAGGATCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACCGCGGAAGGCTTGAAGAGATTGTGGGAGAAAAGATGGAACCCCAAAGGTTATATGATTCAGTCAATGTCCTGTTGTCGCTTCAGGCAAAGTAAAAAGGGTGGTTTAGCTGCATGGGAGCCTGCGGGAGCTCAAGATTGGTTAGAATTACTGAATCCGACGGAATTTTTTGCGGACATTGTGGTTGAACACGAATACGTTGAGTGCACTGGATCTGCAATTCAAGCTTTAGTTTTGTTCAAGAAGTTGTATCCAGGGCATAGGAAGAAAGAGATAGAGAATTTCATAATCAACGCAGTTCGATTCCTGGAAAATACACAAACGGGTGATGGTTCGTGGTACGGAAATTGGGGAGTTTGCTTCACTTACGGTTCTTGGTTCGCACTTGGAGGTCTAGCAGCTGCAGGCAAGACTTACACCAATTGTGCTGCTATTCGTAAAGCCGTTAAATTTCTGCTCACAACACAGAGGGAGGACGGTGGATGGGGGGAGAGTTATCTTTCAAGCCCAAAAAAGATTTATGTACCGCTAGAAGGAAGTCGATCAAATGTTGTTCATACAGCATGGGCTCTCATGGGACTCATTCATGCTGGACAGGCAGACAGAGACCCTACTCCTCTTCATCGTGCTGCAAAGTTGCTCATCAATTCTCAGTTGGAAGAGGGTGATTGGCCCCAACAGGAAATCACTGGAGTGTTCATGAAAAATTGCATGTTGCATTATCCAATGTACAGAGATATTTATCCAATGTGGGCTTTAGCTGAATATCGTAGACGAGTTTCGTTGCCTTCCGATTAA 2256 0.4353 MWRLKVADGGKDPYIFSTNNFVGRQIWEYDPDAGSSEERAEVEAARNNFYQNRFKVKPCADLLWRFQVLRENNFKQTIPSVKIEDREEITYEKVTAAVKRGAYHLSALQTSDGHWPAQIAGPLFFLPPLVFCMYITGHLESVFPEEHQKEILRYIYYHQNEDGGWGLHIEGHSTMFCTALNYICMRILGEGPNGGHDNACARARKWIQDHGSVTHIPSWGKTWLSILGVFDWCGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELFTEPYEKVNWKKARHQCAKEDLYYPHPLIQDLIWDSLYLFTEPLLTRWPFNKLVREKALQVTMKHIHYEDETSRYITIGCVEKVLCMLACWVEDPNGDAFKKHLARVPDYLWMSEDGMTMQSFGSQEWDAGFAVQALLATNLVEEIGPTLAKGHYFIKESQVRDNPFGDFKGMYRHISKGSWTFSDQDHGWQVSDCTAEGLKRLWEKRWNPKGYMIQSMSCCRFRQSKKGGLAAWEPAGAQDWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGHRKKEIENFIINAVRFLENTQTGDGSWYGNWGVCFTYGSWFALGGLAAAGKTYTNCAAIRKAVKFLLTTQREDGGWGESYLSSPKKIYVPLEGSRSNVVHTAWALMGLIHAGQADRDPTPLHRAAKLLINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPMWALAEYRRRVSLPSD 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02676 751 Gene3D - 119 414 - -
Vimu11g02676 751 NCBIfam squalene/oxidosqualene cyclases 98 744 IPR018333 GO:0005811|GO:0016104|GO:0016866
Vimu11g02676 751 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 351 746 IPR008930 -
Vimu11g02676 751 FunFam Uncharacterized protein 119 349 - -
Vimu11g02676 751 PANTHER TERPENE CYCLASE/MUTASE FAMILY MEMBER 1 747 IPR018333 GO:0005811|GO:0016104|GO:0016866
Vimu11g02676 751 ProSitePatterns Terpene synthases signature. 596 610 IPR002365 GO:0016866
Vimu11g02676 751 FunFam Terpene cyclase/mutase family member 389 749 - -
Vimu11g02676 751 SFLD Prenyltransferase Like 2 84 746 IPR018333 GO:0005811|GO:0016104|GO:0016866
Vimu11g02676 751 Gene3D - 504 714 - -
Vimu11g02676 751 Pfam Squalene-hopene cyclase C-terminal domain 418 744 IPR032696 -
Vimu11g02676 751 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 121 410 IPR008930 -
Vimu11g02676 751 CDD SQCY_1 98 742 IPR018333 GO:0005811|GO:0016104|GO:0016866
Vimu11g02676 751 Pfam Squalene-hopene cyclase N-terminal domain 99 403 IPR032697 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02676 Vimu-Chr11 47339583 47347156 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02676 K15813 K20658 gmx:547702 1463.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02676 11 47339583 47347156 Vimu11g02676 11 47339583 47347156 ECH