Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02672 ATGCATGCAGAAGAGATACCAGCCGAACCAGATAACATGAAGGAGCAGGGTACAGTGACTATAGGTCATTCGAGGGAGACCACAAATCAATCAGGCTCTTTAGGTTCGGGTGGAGATGTTCCTCTGTATCCTCCTAATGTGTATGCTCCTCAAGCCCAGGCTTTCTACTATAGAGGTTTTGACAATGGCAACGGTGAATGGGATGAATATTCTTCATATGTCAATTCGGAGGGATTAGAAATTGGATCTCCTGGTGTCTACAATGAAAATCCATCCCTTATTTTCCATTCTGGGTATGGCTTCAACCCACAAATGCCTTATGGACCGTATTCCCCAGTTACCACACCTTTGCCTTCTGTAGGCGGAGACACACAGTTATACTCCTCGCAGCAATTTCCATACACTGGACCACCTTATTATCCTCAGCTAATTCCTCCTAGCTTATCATATCTCAATTCACCTACTCCAGTTTCACAGCCAGAGCTCACCAACCTGGTAGGTATTGACCAACAAGTTGATAACATGTTTTTTGGACCAAGAGCAGGCTATCCATCTGTGGGATCTTTTGGTCGAGGCAGCTTTCCTGTAGCACCTGGTTCCTTTGGCTTTCATGAATCCCAACAAGGATTTGAAGGATCAAGATCTGGTGGTATCTGGTCAGATTGCTCAAAACCCTCAGAAAGACAAAGATCTTTAATGCCTCTATCACCATCTGTTTCTCCACGGCCCATGGGCTCACTTGGGTCATTTGGGCCGAGTGTTGGAATGGCCTCTCATCAACAGCAATCATTGTATGGGTTTGGATCTGGTTCAAACTCTTATGGTAGAGGCTACCTGCCTAACCACGGCTCTAGCTTTGGAGGTACGTCTATTTCCAATCTTAATGATAGGAGTTGTGCTTCTCTTGAAAATAGCAGGAGGCAAGGGCGGCCATCTGCATCTCTTTGCAATTGTAACGGTACTCTTGATATCCTTAGTGAGCAGAACCGAGGTCCAAGGGCCTCAAAGCTGAAAAATCAAATTTTGGCTGAAAAAAGTTCTGTGGATAATAGTAAAAATAGTGCATCTACTGCCAAGTTTCAAAATGAGTCACTCAATCGGTCAGATTTTGCCATAGATTACAAGGATGCCAAATTTTTTGTCATCAAATCTTACAGTGAAGATAATGTCCACAAGAGCATTAAGTATGGTGTCTGGGCTAGTACACCAAATGGAAACAGGAAGTTAGATGCTGCATATCGCCAAGCAATGGAGAAGCAAGAGGCCTGCCCTATATTTCTCTTTTTCTCGGTCAATGCTAGTGCTCAGTTCTGTGGGGTAGCTGAAATGGTTGGACCTGTCAATTTTGACAAGAGTGTGGACTTCTGGCAACAAGATAAGTGGAGTGGGCAGTTTCCCGTGAAGTGGCACATAATTAAAGACGTTCCTAACAGTCAGTTTCGTCACATTGTACTTGAAAATAATGATAACAAGCCTGTGACTAACAGTCGAGATACTCAGGAGGTGAAGTTGCCACAGGGTATTGAAATGTTGGCCATTTTTAAAAACTATGAAACTGATGTTTCCATCCTGGATGATTTTGATTTCTACGAAGACCGGCAGAAGGCTATGCAAGAACGGAAGGCAAGGCAGCAAAACAGCATGATGACAACTGGGTTAGTTGGAGAAAATGAACATCGGAATTCTGCTAACACTACTGGTGAATTTATGAAGCAGATGACAAAGAGCTTTGCCCTAGTTGTCCGCTTAGATGAGAATAACAAAGAAGTTGCCGCGGACAGAGATAATTTAGTCTCTCATGGCCCCATTGGTAACGTAGTTAAATCTGATGATGGTCAATCAGTGCCGGCCTCTTCAACTCAAACCAGTTAG 1872 0.4375 MHAEEIPAEPDNMKEQGTVTIGHSRETTNQSGSLGSGGDVPLYPPNVYAPQAQAFYYRGFDNGNGEWDEYSSYVNSEGLEIGSPGVYNENPSLIFHSGYGFNPQMPYGPYSPVTTPLPSVGGDTQLYSSQQFPYTGPPYYPQLIPPSLSYLNSPTPVSQPELTNLVGIDQQVDNMFFGPRAGYPSVGSFGRGSFPVAPGSFGFHESQQGFEGSRSGGIWSDCSKPSERQRSLMPLSPSVSPRPMGSLGSFGPSVGMASHQQQSLYGFGSGSNSYGRGYLPNHGSSFGGTSISNLNDRSCASLENSRRQGRPSASLCNCNGTLDILSEQNRGPRASKLKNQILAEKSSVDNSKNSASTAKFQNESLNRSDFAIDYKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYRQAMEKQEACPIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLPQGIEMLAIFKNYETDVSILDDFDFYEDRQKAMQERKARQQNSMMTTGLVGENEHRNSANTTGEFMKQMTKSFALVVRLDENNKEVAADRDNLVSHGPIGNVVKSDDGQSVPASSTQTS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02672 623 Gene3D ph1033 like domains 353 529 - -
Vimu11g02672 623 Pfam YT521-B-like domain 377 515 IPR007275 GO:0003723
Vimu11g02672 623 FunFam YTH domain family 1, isoform CRA_a 356 529 - -
Vimu11g02672 623 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 66 591 IPR045168 -
Vimu11g02672 623 ProSiteProfiles YTH domain profile. 377 514 IPR007275 GO:0003723
Vimu11g02672 623 CDD YTH 378 514 IPR007275 GO:0003723
Vimu11g02672 623 MobiDBLite consensus disorder prediction 212 236 - -
Vimu11g02672 623 MobiDBLite consensus disorder prediction 212 255 - -
Vimu11g02672 623 MobiDBLite consensus disorder prediction 593 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02672 Vimu-Chr11 47316643 47321540 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02672 K20102 - gmx:100779278 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02672 11 47316643 47321540 Vimu11g02672 11 47316643 47321540 ECH