Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02671 ATGAATACGGTTTCACCTGAAGTAAAACATTCCTTGCAGATTGTGATGCCAAATCTGGGTTGGAGATGGCTTCTTGCGCTGTCTTCTCTTCCCACCTCTTTCCTTCTTCTGTTCTACAAATTGACTCCTGAATCACCAAGATACCTATGCTTGAAAGGAAGAACAGCTGATGCAATTGAAGTTTTGGAAAAAATAGCAAGAGTAAATGGAAGAGAACTTCCTTCCGGTAACCTTGTCTCTGACCATGAAATTGAGCTACAGCAAATTGATAACCCTTCAGAGGACGCACGCTTGCTCTCTCCGACAACAAATGAAATTAAACATCCTTTAGGAATGGATTCCAATTTAGGTGGTATCTCATCATTGTCGGTGCTTCTCTCACCAAAGTTGGCAAGGTCAACAGTTCTGTTATGGGCTGTGTTCTTTGGTAATGCCTTTTCGTATTATGGCCTTGTTTTGTTGACAACCGAGCTGAACGGACATAGTAAATGCATGTCACATAAATTGCAGACAGAGAAGTCCGAGGATGTTAGTTACAAGAGTATTTTTATTGCCAGTTTTGCAGAGATACCTGGACTCCTCTTGTCAGCTGTGGCAGTCGACAAACTCGGTCGAAAACTATCAATGTCAACCATGTTCTTCATCTGCTGTATTTTTCTTCTCCCGTTAGTATTCCATCTGCCTGAAGGCTTAACAACGGGCCTTTTATTTCTCGCTCGCATTTGCATCACAGCAACCTTCACAATTGTGTATATATATGCACCAGAGATGTACCCTACATCAGTTAGAACAACTGGTGTGGGAATTGCAAGTTCGGTGGGCAGAATTGGTGGAATGATATGTCCTCTGGTTGCTGTGGGTTTAGTACATGGATGTCATCAAACTGTAGCTGTCCTTCTGTTTGAGATAATAGTACTTCTTTCAGGAATATGTGTCGTGTTCTTACCGATTGAGACCATGGGCCAGGAACTCAGAGATAGTGTGCAAGTCTAA 993 0.423 MNTVSPEVKHSLQIVMPNLGWRWLLALSSLPTSFLLLFYKLTPESPRYLCLKGRTADAIEVLEKIARVNGRELPSGNLVSDHEIELQQIDNPSEDARLLSPTTNEIKHPLGMDSNLGGISSLSVLLSPKLARSTVLLWAVFFGNAFSYYGLVLLTTELNGHSKCMSHKLQTEKSEDVSYKSIFIASFAEIPGLLLSAVAVDKLGRKLSMSTMFFICCIFLLPLVFHLPEGLTTGLLFLARICITATFTIVYIYAPEMYPTSVRTTGVGIASSVGRIGGMICPLVAVGLVHGCHQTVAVLLFEIIVLLSGICVVFLPIETMGQELRDSVQV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02671 330 PANTHER SYNAPTIC VESICLE GLYCOPROTEIN 2 16 322 - -
Vimu11g02671 330 SUPERFAMILY MFS general substrate transporter 15 325 IPR036259 -
Vimu11g02671 330 ProSitePatterns Sugar transport proteins signature 1. 196 211 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu11g02671 330 Gene3D MFS general substrate transporter like domains 10 330 IPR036259 -
Vimu11g02671 330 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 320 IPR020846 GO:0022857
Vimu11g02671 330 Pfam Sugar (and other) transporter 18 325 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02671 Vimu-Chr11 47311107 47313067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02671 44 328 Organic Solute Cotransporters AT3G20660 25.597 2.97e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02671 - - gmx:100816337 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02671 11 47311107 47313067 Vimu11g02671 11 47311107 47313067 ECH