Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02669 CTTATAGGGAGGAGCCTGAGTAGACTAAAACTGAATCATATTAATGATCTGAATGAGTGTTCTCTGTTACTTGCATTCAAATTCATTACCAAAAATGTCCATAAGTTTGATAAAGATTTGCATCAGGTTCTGAAACAGCAGCAGTACCAGAAGAAGAAACCTAAATTAAGCTCTACTCCGGAAGGGACACACAATGAATCCCATTGTCTTATCTGTAGGGGGGGAAACAGTTGCCAAACAGTTCTTTCAAGAACAAAACTGATGAATACTTTGATTGGAAAAGGTAAGCCACACGAAGCTCAGACCGTCTTCAACAATTTGACTGAAGAAGGGCATAGGCCTACTCTCATAACATACACAACTCTTGTGGCTGCTCTAACCCGCCAAAAGCGTTTCAAGTCTATTCCTGCAGTTCTTTCTAAAGTTGCAGACAATGGGATGAAGCCTGATTCAATACTTATCAATGCCATGATCAATGCGTTTTCTGATTCTGGCAAGGTTGATGAAGCCATGAAAATATTTAAGAAAATGAAGGAGTATGGATGTAAACCAACAACCAGTACTTATAATACCCTCATTAAAGGATTTGGCATTGCCGGAAGGCCTTACGAGGCTATGAAATTGACAGAGATGATGGCTCAGGATGAAAATGTGAAACCCAATGATAGAACATATAACATTCTCATTCAAGCCTGGTGTACCAAGAAAAAAATGGAAGAAGCATGGAATGTTATGCATAAAATGGTGGCTTCTGGCATTCAGCCGGATGTGGTCACATATAACACGATGGCAAGGGCATATGCTCAGATCGGTGAAACAGAGAAAGCTGAAAGATTAATATTGAAAATGCAGTACAGCAAAGTAAAACCTAATGAACGAACTTGTGGTATCGTAATAAGTGGTTACTGCAAGGAAGGCAATATGACAGAAGCCTTGAGGTTTCTACACGGAAGAATGAAGGAGCTTGGTGTGCATCCAAATCCAGTAGTTTTCAACTCGCTTATCAAGGGATATCTAGATATTAAAGACACAAATGGAGTAGATGAGGCACTGGCATTGATGGAAGAATTTGGGATCAAACCAGATGTAGTGACATTTAGCACCATCATGAATGCATGGAGTTCGGCAGGGCTTATGGATAATTGTGAGGAGATATTCAATAACATGGTGAAGGCAGATATAGAACCTGACATCCACGCATATAGCATCCTTGCAAAAGGATATGCACGTGGTGGACAGTCACAAAAGGCTGAGGCTCTTCTGACTTCCATGAGCAAATATGGTGTAGAACCAAATGTGGTGATCTTCACTACCATCATCAGTGGATGGTGTGCAGAAGGAAAAATGGATCGCGCCATTAGACTTTATGAGAAAATGCAAGATGTGGGAATTCCCCCAAATTTGAAAACTTATGAAACCTTGATATGGGGATACGGAGAAGCAAAACTACCATGGAAAGCAGAAGAGTTACTTACTACTATGGAAGAGAGGGGTGTTGCCCCTGAAACATCCACTGTGCAACTGGTTGCCGATGCTTGGCGTTCCATTGGTCTATTCAAAGAAGCCAACAGAATTCTAAATGATTCAGAAGAAGAAGGATGTGACGACAAGACACCGGTGCAGAGCTTGGAGAGACAGAAATTCAGTGCAATACCTGATGCAGTGGTACCTCATCCAGAAAGAACAACTAATGGCAACATAAACATGCGAAATATTTCCACTTCCATGTTTTTGGTTCGTACAACAAATTCATACGGACTACAAGCACATATTGTAAGTAAACAGCAGATTCAAAATCAGGTTGTTAGGCCATTCCTTGACTATTGCGGAGTAGTGTCAATACTCTGTTGA 1851 0.4084 LIGRSLSRLKLNHINDLNECSLLLAFKFITKNVHKFDKDLHQVLKQQQYQKKKPKLSSTPEGTHNESHCLICRGGNSCQTVLSRTKLMNTLIGKGKPHEAQTVFNNLTEEGHRPTLITYTTLVAALTRQKRFKSIPAVLSKVADNGMKPDSILINAMINAFSDSGKVDEAMKIFKKMKEYGCKPTTSTYNTLIKGFGIAGRPYEAMKLTEMMAQDENVKPNDRTYNILIQAWCTKKKMEEAWNVMHKMVASGIQPDVVTYNTMARAYAQIGETEKAERLILKMQYSKVKPNERTCGIVISGYCKEGNMTEALRFLHGRMKELGVHPNPVVFNSLIKGYLDIKDTNGVDEALALMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNNMVKADIEPDIHAYSILAKGYARGGQSQKAEALLTSMSKYGVEPNVVIFTTIISGWCAEGKMDRAIRLYEKMQDVGIPPNLKTYETLIWGYGEAKLPWKAEELLTTMEERGVAPETSTVQLVADAWRSIGLFKEANRILNDSEEEGCDDKTPVQSLERQKFSAIPDAVVPHPERTTNGNINMRNISTSMFLVRTTNSYGLQAHIVSKQQIQNQVVRPFLDYCGVVSILC 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Vimu11g02669 616 Pfam PPR repeat family 149 196 IPR002885 -
Vimu11g02669 616 Pfam PPR repeat family 294 338 IPR002885 -
Vimu11g02669 616 Pfam PPR repeat family 361 410 IPR002885 -
Vimu11g02669 616 Pfam PPR repeat family 431 478 IPR002885 -
Vimu11g02669 616 Pfam PPR repeat family 224 268 IPR002885 -
Vimu11g02669 616 Gene3D Tetratricopeptide repeat domain 65 197 IPR011990 GO:0005515
Vimu11g02669 616 Gene3D Tetratricopeptide repeat domain 198 312 IPR011990 GO:0005515
Vimu11g02669 616 PANTHER OS01G0228400 PROTEIN 45 612 - -
Vimu11g02669 616 NCBIfam pentatricopeptide repeat 294 327 IPR002885 -
Vimu11g02669 616 NCBIfam pentatricopeptide repeat 258 292 IPR002885 -
Vimu11g02669 616 NCBIfam pentatricopeptide repeat 434 467 IPR002885 -
Vimu11g02669 616 NCBIfam pentatricopeptide repeat 154 185 IPR002885 -
Vimu11g02669 616 NCBIfam pentatricopeptide repeat 400 433 IPR002885 -
Vimu11g02669 616 NCBIfam pentatricopeptide repeat 329 363 IPR002885 -
Vimu11g02669 616 NCBIfam pentatricopeptide repeat 224 257 IPR002885 -
Vimu11g02669 616 NCBIfam pentatricopeptide repeat 364 398 IPR002885 -
Vimu11g02669 616 NCBIfam pentatricopeptide repeat 188 221 IPR002885 -
Vimu11g02669 616 Gene3D Tetratricopeptide repeat domain 315 425 IPR011990 GO:0005515
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vimu11g02669 616 Gene3D Tetratricopeptide repeat domain 426 496 IPR011990 GO:0005515
Vimu11g02669 616 SUPERFAMILY HCP-like 159 496 - -
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 326 IPR002885 -
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vimu11g02669 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 220 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02669 78 556 Glycosyltransferase AT1G05670 28.454 6.27e-63 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02669 K17710 - gmx:100820389 964.911