Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02562 ATGAACTGCTTCTCGCTGATATCATCATACGCCGTCGTCGTCGGAAGGACAGCTCGATTAATCGCCAACTGTTCCCCTCACGGCTGCTCGTTCCCAACGTTGTTAGAATTTCGAGGAGTTAGGTCTTTCCGTTCAGAATTCGTGTTCACCGCTCGCTGCTTTTCCACGAAAAAAGGACGCAAAAGTGGTTCTAGTTCTTCTCGGTTGCACAAGGCCGAACCTGAAGCACCAATCATGAAGAAGGAGCAGGACGCTTTCTATGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAGTAGTCTCGCCGATTCTCAGGCTCAAGTTGGACCTTCTGTTTGCAATCCTCCTGTTAGTGTGTACAAGGGATATTCATTATCAAAGGACACTGAGGAATATCTTGCCTCGCATGGACTAAAGAATGCATTATATACAATTAGAGCTGCGGATTTGAAAGAGGATTTATTGGGCATGCTTGTTCCCTGCCCATTCCAGGAACCTCCTACCAAAGAGGGCAACTCAAATATGGACGTATCTAAAAAGAGATCTTTGGGAGTGCATGGACAGGATGAGAAAGCAATAGTTGAAGATCCTTTGAGAAAGCAAGTCAAGTTAGAACATAATGCTGTAATCGAAGCACCTTCACAAGCAACTCGGACTTGTATTCTTGAGTTTGATGGTGCATCGAAAGGAAATCCTGGAAAATCTGGTGCTGGGGCTGTTCTGCGAGCTGTTGATGGAAGTTTGATTTGTAGGTTACGTGAAGGAGTGGGTGTGGCAACTAACAATGCTGCGGAATATCGTGCAATGATATTGGGAATGAAATATGCTCTTAAAAAGGGATTTACTGGTATTCGTATCCAAGGTGATTCCAAACTTGTTTGCATGCAGCCCCACACTGGTCCACTTCTGTCAATTGCTCTACCTGCTGAAGTTGTTGACAAGGACCCATTCCTCGAAACACTGGCAATTAATGATGGGGATGAATTTTCTTCTGCTATTGATGGTTCCTGGAAGGTCAAGAATGAGAACTTGTCTACATTATATAAGGTGGCAAAAGAACTGAAGGATAAATTTTCTTCGTTCCAGATCAACCATGTTCTAAGGAACTTCAATTCTGACGCTGACGCTCAAGCAAATTTGGCTATCAACCTTGCAGGTGAGATGGCCAAGTCAAGGAAGAGTGTGTATAATATTGACTGA 1200 0.4408 MNCFSLISSYAVVVGRTARLIANCSPHGCSFPTLLEFRGVRSFRSEFVFTARCFSTKKGRKSGSSSSRLHKAEPEAPIMKKEQDAFYVVRKGDVVGIYSSLADSQAQVGPSVCNPPVSVYKGYSLSKDTEEYLASHGLKNALYTIRAADLKEDLLGMLVPCPFQEPPTKEGNSNMDVSKKRSLGVHGQDEKAIVEDPLRKQVKLEHNAVIEAPSQATRTCILEFDGASKGNPGKSGAGAVLRAVDGSLICRLREGVGVATNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQPHTGPLLSIALPAEVVDKDPFLETLAINDGDEFSSAIDGSWKVKNENLSTLYKVAKELKDKFSSFQINHVLRNFNSDADAQANLAINLAGEMAKSRKSVYNID 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02562 399 Pfam Reverse transcriptase-like 330 380 IPR002156 GO:0003676|GO:0004523
Vimu11g02562 399 Pfam Reverse transcriptase-like 224 294 IPR002156 GO:0003676|GO:0004523
Vimu11g02562 399 PANTHER THIOL-DISULFIDE OXIDOREDUCTASE DCC 332 388 - -
Vimu11g02562 399 SUPERFAMILY Ribonuclease H-like 219 297 IPR012337 -
Vimu11g02562 399 Gene3D - 219 387 IPR036397 GO:0003676
Vimu11g02562 399 CDD RNase_HI_like 220 382 - -
Vimu11g02562 399 Gene3D - 83 135 IPR037056 -
Vimu11g02562 399 ProSiteProfiles RNase H type-1 domain profile. 216 383 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02562 Vimu-Chr11 45283156 45288872 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02562 - - gmx:100779114 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02562 11 45283156 45288872 Vimu11g02562 11 45283156 45288872 ECH