Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02552 ATGGACCATCTTAGACTTATTCTCCTACTCTTCCTGTTCCTACCCACCTGCTTCTCTTTCACGTTTCAAACTCCTTCAATCAATGAGTTTACCAATCAAAGTTCTTCTTCTTTGAAGCAGAAGATTCTGGAGCTAGCTAACAGTCCTAGCACGGTGAAATGGATGAAGAGAATAAGGAGGGAAATCCATGAATATCCAGAACTTGCAAATGAGGAGTTCAGGACAAGTGCTCTCATCAGGCGTGAGCTTGACCGGTTGGGTGTTGCTTACAACTGGCCTGTGGCTGGGACTGGTGTGGTTGCCAAACTTGGTTCTGGGTCTCCTCCTTTTGTTGCTCTTAGAGCAGACATGGATGCTTTGCCAATTCAGGAAAGGGTTGATTGGGAGCATAAGAGCAAAGTAGATGGAAAAATGCATGCTTGTGCACACGATGCACATGTTGCCATGCTACTTGGGGCAACAAAGATACTGCAAGAAATGAAGGACATGTTACAGACTACTGTTGTTCTAATATTCCAACCAGCAGAGGAAAGAGGCACAGGAGCAAAAGAAATGATGCAAGAAAAGGTGCTTGAAGATGTTGGGGCTATTCTTGGCTTGCACTTGGGGTCAGAGTACGAAACGGGTGTTGTTGCATCACGGCCAGGGGAGTTTTTAGCTGGATGTGGAGGCTTCAAAGCAAAAATCAGTGGAAAACGGGGTTTAGCAGGAGTTCCCCAGCATTGTTATGATCCAGTTTTGGCTGCTTCAACATCAGTTATTAGCTTGCAAAACATTGTTTCAAGGGAGGTTGATCCTTTGGATTCTCAGGTGCTTTCTGTGGCCATGATCAATGCAGGGTATGCTCACGACATCATCCCTGATTCAGCTACATTTGGAGGTACTTATAGAGCGTTCAGCAAAAAGAGCTTCTATGGACTGAGGAAAAGGATAGAAGAGGTTGTGAAAGGGCAGGCAGAAGTACATAGGTGCCATGCTGAGGTTGAGTTCTTAGGTAATGAACATCCCACAATCCCTCCAACCACAAATGATGTAAGAATATACGAACTAGCACACCAAGTCTCTAGTAAGATCGTTGGAGAAAATAACATAGAATTAGCTCCCCTCTTCACTGGGAGTGAAGATTTTGCATTTTACTTGGAAAAAGTACCAGGCACATTCCTTCTTCTGGGTACAAGAAATGAGAAGAGTGGATCCACATATCCTGCTCATAGTCCTTACTTTTTCATTGATGAAGATGTTCTTCCCATTGGGGCTGCAATACATGCAGCATTTGCTCTTTCATACCACTCTTTTTCAACAAACTCATACTCCTTGTAA 1320 0.4394 MDHLRLILLLFLFLPTCFSFTFQTPSINEFTNQSSSSLKQKILELANSPSTVKWMKRIRREIHEYPELANEEFRTSALIRRELDRLGVAYNWPVAGTGVVAKLGSGSPPFVALRADMDALPIQERVDWEHKSKVDGKMHACAHDAHVAMLLGATKILQEMKDMLQTTVVLIFQPAEERGTGAKEMMQEKVLEDVGAILGLHLGSEYETGVVASRPGEFLAGCGGFKAKISGKRGLAGVPQHCYDPVLAASTSVISLQNIVSREVDPLDSQVLSVAMINAGYAHDIIPDSATFGGTYRAFSKKSFYGLRKRIEEVVKGQAEVHRCHAEVEFLGNEHPTIPPTTNDVRIYELAHQVSSKIVGENNIELAPLFTGSEDFAFYLEKVPGTFLLLGTRNEKSGSTYPAHSPYFFIDEDVLPIGAAIHAAFALSYHSFSTNSYSL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02552 439 SUPERFAMILY Zn-dependent exopeptidases 51 429 - -
Vimu11g02552 439 Pfam Peptidase dimerisation domain 221 319 IPR011650 -
Vimu11g02552 439 FunFam N-acetyldiaminopimelate deacetylase 220 337 - -
Vimu11g02552 439 Gene3D - 220 339 - -
Vimu11g02552 439 CDD M20_IAA_Hyd 55 429 IPR044757 GO:0009850|GO:0016787
Vimu11g02552 439 PIRSF Amidohydrol_AmhX 39 432 IPR017439 GO:0016787
Vimu11g02552 439 NCBIfam amidohydrolase 56 418 IPR017439 GO:0016787
Vimu11g02552 439 SUPERFAMILY Bacterial exopeptidase dimerisation domain 220 339 IPR036264 -
Vimu11g02552 439 Gene3D Zn peptidases 56 423 - -
Vimu11g02552 439 PANTHER PEPTIDASE M20 FAMILY MEMBER 33 435 IPR017439 GO:0016787
Vimu11g02552 439 Pfam Peptidase family M20/M25/M40 112 426 IPR002933 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02552 Vimu-Chr11 45167162 45169914 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02552 K14664 - gmx:100780711 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02552 11 45167162 45169914 Vimu11g02552 11 45167162 45169914 ECH